Motif | BMAL1.H12INVIVO.0.PSM.A |
Gene (human) | ARNTL (GeneCards) |
Gene synonyms (human) | BHLHE5, BMAL1, MOP3, PASD3 |
Gene (mouse) | Arntl |
Gene synonyms (mouse) | Bmal1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | A |
Motif | BMAL1.H12INVIVO.0.PSM.A |
Gene (human) | ARNTL (GeneCards) |
Gene synonyms (human) | BHLHE5, BMAL1, MOP3, PASD3 |
Gene (mouse) | Arntl |
Gene synonyms (mouse) | Bmal1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | A |
Motif length | 10 |
Consensus | dbMCACGTGM |
GC content | 60.82% |
Information content (bits; total / per base) | 10.923 / 1.092 |
Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
Aligned words | 989 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 6 (36) | 0.786 | 0.92 | 0.702 | 0.868 | 0.718 | 0.898 | 2.328 | 3.588 | 85.858 | 179.328 |
Mouse | 30 (186) | 0.864 | 0.96 | 0.773 | 0.925 | 0.809 | 0.934 | 2.646 | 3.729 | 105.354 | 464.18 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.801 | 0.779 | 0.775 | 0.762 | 0.762 | 0.752 |
best | 0.992 | 0.985 | 0.992 | 0.985 | 0.992 | 0.984 | |
Methyl HT-SELEX, 1 experiments | median | 0.987 | 0.975 | 0.986 | 0.973 | 0.984 | 0.97 |
best | 0.987 | 0.975 | 0.986 | 0.973 | 0.984 | 0.97 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.615 | 0.583 | 0.564 | 0.552 | 0.54 | 0.534 |
best | 0.992 | 0.985 | 0.992 | 0.985 | 0.992 | 0.984 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | PAS {1.2.5} (TFClass) |
TF subfamily | PAS-ARNT {1.2.5.2} (TFClass) |
TFClass ID | TFClass: 1.2.5.2.3 |
HGNC | HGNC:701 |
MGI | MGI:1096381 |
EntrezGene (human) | GeneID:406 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11865 (SSTAR profile) |
UniProt ID (human) | BMAL1_HUMAN |
UniProt ID (mouse) | BMAL1_MOUSE |
UniProt AC (human) | O00327 (TFClass) |
UniProt AC (mouse) | Q9WTL8 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 6 human, 30 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | BMAL1.H12INVIVO.0.PSM.A.pcm |
PWM | BMAL1.H12INVIVO.0.PSM.A.pwm |
PFM | BMAL1.H12INVIVO.0.PSM.A.pfm |
Alignment | BMAL1.H12INVIVO.0.PSM.A.words.tsv |
Threshold to P-value map | BMAL1.H12INVIVO.0.PSM.A.thr |
Motif in other formats | |
JASPAR format | BMAL1.H12INVIVO.0.PSM.A_jaspar_format.txt |
MEME format | BMAL1.H12INVIVO.0.PSM.A_meme_format.meme |
Transfac format | BMAL1.H12INVIVO.0.PSM.A_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 264.0 | 157.0 | 386.0 | 182.0 |
02 | 160.0 | 186.0 | 452.0 | 191.0 |
03 | 335.0 | 480.0 | 170.0 | 4.0 |
04 | 62.0 | 918.0 | 4.0 | 5.0 |
05 | 911.0 | 8.0 | 40.0 | 30.0 |
06 | 4.0 | 766.0 | 14.0 | 205.0 |
07 | 7.0 | 7.0 | 973.0 | 2.0 |
08 | 20.0 | 15.0 | 5.0 | 949.0 |
09 | 0.0 | 0.0 | 985.0 | 4.0 |
10 | 426.0 | 427.0 | 22.0 | 114.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.267 | 0.159 | 0.39 | 0.184 |
02 | 0.162 | 0.188 | 0.457 | 0.193 |
03 | 0.339 | 0.485 | 0.172 | 0.004 |
04 | 0.063 | 0.928 | 0.004 | 0.005 |
05 | 0.921 | 0.008 | 0.04 | 0.03 |
06 | 0.004 | 0.775 | 0.014 | 0.207 |
07 | 0.007 | 0.007 | 0.984 | 0.002 |
08 | 0.02 | 0.015 | 0.005 | 0.96 |
09 | 0.0 | 0.0 | 0.996 | 0.004 |
10 | 0.431 | 0.432 | 0.022 | 0.115 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.065 | -0.45 | 0.443 | -0.304 |
02 | -0.431 | -0.282 | 0.6 | -0.256 |
03 | 0.302 | 0.66 | -0.371 | -3.773 |
04 | -1.363 | 1.307 | -3.773 | -3.612 |
05 | 1.299 | -3.243 | -1.786 | -2.06 |
06 | -3.773 | 1.126 | -2.762 | -0.186 |
07 | -3.351 | -3.351 | 1.365 | -4.203 |
08 | -2.439 | -2.7 | -3.612 | 1.34 |
09 | -4.973 | -4.973 | 1.377 | -3.773 |
10 | 0.541 | 0.543 | -2.351 | -0.766 |
P-value | Threshold |
---|---|
0.001 | 4.378565 |
0.0005 | 5.296525 |
0.0001 | 7.7682 |