Motif | BHA15.H12CORE.1.SM.B |
Gene (human) | BHLHA15 (GeneCards) |
Gene synonyms (human) | BHLHB8, MIST1 |
Gene (mouse) | Bhlha15 |
Gene synonyms (mouse) | Bhlhb8, Mist1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | BHA15.H12CORE.1.SM.B |
Gene (human) | BHLHA15 (GeneCards) |
Gene synonyms (human) | BHLHB8, MIST1 |
Gene (mouse) | Bhlha15 |
Gene synonyms (mouse) | Bhlhb8, Mist1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 14 |
Consensus | nnbRMCATATGGhn |
GC content | 46.58% |
Information content (bits; total / per base) | 15.302 / 1.093 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 332 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 3 (17) | 0.869 | 0.892 | 0.687 | 0.768 | 0.686 | 0.751 | 1.905 | 3.036 | 52.62 | 152.328 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.964 | 0.955 | 0.854 | 0.852 | 0.748 | 0.756 |
best | 0.999 | 0.998 | 0.997 | 0.995 | 0.98 | 0.976 | |
Methyl HT-SELEX, 1 experiments | median | 0.999 | 0.998 | 0.997 | 0.995 | 0.98 | 0.976 |
best | 0.999 | 0.998 | 0.997 | 0.995 | 0.98 | 0.976 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.944 | 0.937 | 0.759 | 0.771 | 0.636 | 0.664 |
best | 0.984 | 0.974 | 0.949 | 0.932 | 0.861 | 0.848 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | Tal-related {1.2.3} (TFClass) |
TF subfamily | Neurogenin-ATO {1.2.3.4} (TFClass) |
TFClass ID | TFClass: 1.2.3.4.16 |
HGNC | HGNC:22265 |
MGI | MGI:891976 |
EntrezGene (human) | GeneID:168620 (SSTAR profile) |
EntrezGene (mouse) | GeneID:17341 (SSTAR profile) |
UniProt ID (human) | BHA15_HUMAN |
UniProt ID (mouse) | BHA15_MOUSE |
UniProt AC (human) | Q7RTS1 (TFClass) |
UniProt AC (mouse) | Q9QYC3 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 3 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | BHA15.H12CORE.1.SM.B.pcm |
PWM | BHA15.H12CORE.1.SM.B.pwm |
PFM | BHA15.H12CORE.1.SM.B.pfm |
Alignment | BHA15.H12CORE.1.SM.B.words.tsv |
Threshold to P-value map | BHA15.H12CORE.1.SM.B.thr |
Motif in other formats | |
JASPAR format | BHA15.H12CORE.1.SM.B_jaspar_format.txt |
MEME format | BHA15.H12CORE.1.SM.B_meme_format.meme |
Transfac format | BHA15.H12CORE.1.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 51.75 | 90.75 | 103.75 | 85.75 |
02 | 60.25 | 76.25 | 130.25 | 65.25 |
03 | 26.0 | 66.0 | 145.0 | 95.0 |
04 | 243.0 | 4.0 | 67.0 | 18.0 |
05 | 141.0 | 172.0 | 19.0 | 0.0 |
06 | 0.0 | 332.0 | 0.0 | 0.0 |
07 | 332.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 4.0 | 328.0 |
09 | 328.0 | 4.0 | 0.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 332.0 |
11 | 0.0 | 0.0 | 332.0 | 0.0 |
12 | 0.0 | 17.0 | 297.0 | 18.0 |
13 | 125.75 | 93.75 | 45.75 | 66.75 |
14 | 98.25 | 81.25 | 84.25 | 68.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.156 | 0.273 | 0.313 | 0.258 |
02 | 0.181 | 0.23 | 0.392 | 0.197 |
03 | 0.078 | 0.199 | 0.437 | 0.286 |
04 | 0.732 | 0.012 | 0.202 | 0.054 |
05 | 0.425 | 0.518 | 0.057 | 0.0 |
06 | 0.0 | 1.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.012 | 0.988 |
09 | 0.988 | 0.012 | 0.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 1.0 |
11 | 0.0 | 0.0 | 1.0 | 0.0 |
12 | 0.0 | 0.051 | 0.895 | 0.054 |
13 | 0.379 | 0.282 | 0.138 | 0.201 |
14 | 0.296 | 0.245 | 0.254 | 0.206 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.462 | 0.088 | 0.22 | 0.032 |
02 | -0.314 | -0.083 | 0.444 | -0.236 |
03 | -1.124 | -0.225 | 0.551 | 0.133 |
04 | 1.063 | -2.74 | -0.21 | -1.468 |
05 | 0.523 | 0.72 | -1.418 | -4.064 |
06 | -4.064 | 1.373 | -4.064 | -4.064 |
07 | 1.373 | -4.064 | -4.064 | -4.064 |
08 | -4.064 | -4.064 | -2.74 | 1.361 |
09 | 1.361 | -2.74 | -4.064 | -4.064 |
10 | -4.064 | -4.064 | -4.064 | 1.373 |
11 | -4.064 | -4.064 | 1.373 | -4.064 |
12 | -4.064 | -1.521 | 1.262 | -1.468 |
13 | 0.41 | 0.12 | -0.582 | -0.214 |
14 | 0.166 | -0.021 | 0.015 | -0.192 |
P-value | Threshold |
---|---|
0.001 | 2.30971 |
0.0005 | 3.704915 |
0.0001 | 6.372315 |