Motif | BCL6B.H12RSNP.0.PSM.D |
Gene (human) | BCL6B (GeneCards) |
Gene synonyms (human) | BAZF, ZNF62 |
Gene (mouse) | Bcl6b |
Gene synonyms (mouse) | Bazf |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | BCL6B.H12RSNP.0.PSM.D |
Gene (human) | BCL6B (GeneCards) |
Gene synonyms (human) | BAZF, ZNF62 |
Gene (mouse) | Bcl6b |
Gene synonyms (mouse) | Bazf |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 15 |
Consensus | ddMYYTCYARGRAhn |
GC content | 39.7% |
Information content (bits; total / per base) | 12.191 / 0.813 |
Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
Aligned words | 998 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 1 (7) | 0.859 | 0.907 | 0.812 | 0.865 | 0.858 | 0.909 | 3.962 | 4.404 | 225.658 | 236.602 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 1.0 | 1.0 | 0.925 | 0.935 | 0.713 | 0.767 |
best | 1.0 | 1.0 | 0.985 | 0.985 | 0.767 | 0.814 | |
Methyl HT-SELEX, 1 experiments | median | 1.0 | 1.0 | 0.864 | 0.884 | 0.659 | 0.72 |
best | 1.0 | 1.0 | 0.864 | 0.884 | 0.659 | 0.72 | |
Non-Methyl HT-SELEX, 1 experiments | median | 1.0 | 1.0 | 0.985 | 0.985 | 0.767 | 0.814 |
best | 1.0 | 1.0 | 0.985 | 0.985 | 0.767 | 0.814 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
TF subfamily | BCL6 {2.3.3.22} (TFClass) |
TFClass ID | TFClass: 2.3.3.22.1 |
HGNC | HGNC:1002 |
MGI | MGI:1278332 |
EntrezGene (human) | GeneID:255877 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12029 (SSTAR profile) |
UniProt ID (human) | BCL6B_HUMAN |
UniProt ID (mouse) | BCL6B_MOUSE |
UniProt AC (human) | Q8N143 (TFClass) |
UniProt AC (mouse) | O88282 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 1 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | BCL6B.H12RSNP.0.PSM.D.pcm |
PWM | BCL6B.H12RSNP.0.PSM.D.pwm |
PFM | BCL6B.H12RSNP.0.PSM.D.pfm |
Alignment | BCL6B.H12RSNP.0.PSM.D.words.tsv |
Threshold to P-value map | BCL6B.H12RSNP.0.PSM.D.thr |
Motif in other formats | |
JASPAR format | BCL6B.H12RSNP.0.PSM.D_jaspar_format.txt |
MEME format | BCL6B.H12RSNP.0.PSM.D_meme_format.meme |
Transfac format | BCL6B.H12RSNP.0.PSM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 214.0 | 163.0 | 197.0 | 424.0 |
02 | 186.0 | 107.0 | 475.0 | 230.0 |
03 | 134.0 | 683.0 | 65.0 | 116.0 |
04 | 128.0 | 197.0 | 17.0 | 656.0 |
05 | 56.0 | 175.0 | 39.0 | 728.0 |
06 | 8.0 | 9.0 | 9.0 | 972.0 |
07 | 6.0 | 900.0 | 6.0 | 86.0 |
08 | 44.0 | 340.0 | 84.0 | 530.0 |
09 | 960.0 | 13.0 | 15.0 | 10.0 |
10 | 192.0 | 3.0 | 741.0 | 62.0 |
11 | 50.0 | 28.0 | 820.0 | 100.0 |
12 | 775.0 | 74.0 | 92.0 | 57.0 |
13 | 827.0 | 41.0 | 26.0 | 104.0 |
14 | 350.0 | 133.0 | 81.0 | 434.0 |
15 | 220.0 | 190.0 | 220.0 | 368.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.214 | 0.163 | 0.197 | 0.425 |
02 | 0.186 | 0.107 | 0.476 | 0.23 |
03 | 0.134 | 0.684 | 0.065 | 0.116 |
04 | 0.128 | 0.197 | 0.017 | 0.657 |
05 | 0.056 | 0.175 | 0.039 | 0.729 |
06 | 0.008 | 0.009 | 0.009 | 0.974 |
07 | 0.006 | 0.902 | 0.006 | 0.086 |
08 | 0.044 | 0.341 | 0.084 | 0.531 |
09 | 0.962 | 0.013 | 0.015 | 0.01 |
10 | 0.192 | 0.003 | 0.742 | 0.062 |
11 | 0.05 | 0.028 | 0.822 | 0.1 |
12 | 0.777 | 0.074 | 0.092 | 0.057 |
13 | 0.829 | 0.041 | 0.026 | 0.104 |
14 | 0.351 | 0.133 | 0.081 | 0.435 |
15 | 0.22 | 0.19 | 0.22 | 0.369 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.152 | -0.422 | -0.234 | 0.527 |
02 | -0.291 | -0.838 | 0.641 | -0.081 |
03 | -0.616 | 1.003 | -1.326 | -0.758 |
04 | -0.661 | -0.234 | -2.596 | 0.962 |
05 | -1.471 | -0.352 | -1.819 | 1.066 |
06 | -3.252 | -3.154 | -3.154 | 1.355 |
07 | -3.482 | 1.278 | -3.482 | -1.052 |
08 | -1.704 | 0.308 | -1.075 | 0.75 |
09 | 1.342 | -2.837 | -2.709 | -3.065 |
10 | -0.26 | -3.973 | 1.084 | -1.372 |
11 | -1.58 | -2.134 | 1.185 | -0.904 |
12 | 1.129 | -1.199 | -0.986 | -1.453 |
13 | 1.194 | -1.772 | -2.204 | -0.865 |
14 | 0.336 | -0.623 | -1.111 | 0.551 |
15 | -0.125 | -0.27 | -0.125 | 0.386 |
P-value | Threshold |
---|---|
0.001 | 4.17226 |
0.0005 | 5.12556 |
0.0001 | 7.09651 |