MotifBCL6B.H12INVIVO.0.PSM.A
Gene (human)BCL6B
(GeneCards)
Gene synonyms (human)BAZF, ZNF62
Gene (mouse)Bcl6b
Gene synonyms (mouse)Bazf
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length15
ConsensusddMYYTCYARGRAhn
GC content39.7%
Information content (bits; total / per base)12.191 / 0.813
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words998

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.859 0.907 0.812 0.865 0.858 0.909 3.962 4.404 225.658 236.602

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 1.0 1.0 0.925 0.935 0.713 0.767
best 1.0 1.0 0.985 0.985 0.767 0.814
Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.864 0.884 0.659 0.72
best 1.0 1.0 0.864 0.884 0.659 0.72
Non-Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.985 0.985 0.767 0.814
best 1.0 1.0 0.985 0.985 0.767 0.814
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyBCL6 {2.3.3.22} (TFClass)
TFClass IDTFClass: 2.3.3.22.1
HGNCHGNC:1002
MGIMGI:1278332
EntrezGene (human)GeneID:255877
(SSTAR profile)
EntrezGene (mouse)GeneID:12029
(SSTAR profile)
UniProt ID (human)BCL6B_HUMAN
UniProt ID (mouse)BCL6B_MOUSE
UniProt AC (human)Q8N143
(TFClass)
UniProt AC (mouse)O88282
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01214.0163.0197.0424.0
02186.0107.0475.0230.0
03134.0683.065.0116.0
04128.0197.017.0656.0
0556.0175.039.0728.0
068.09.09.0972.0
076.0900.06.086.0
0844.0340.084.0530.0
09960.013.015.010.0
10192.03.0741.062.0
1150.028.0820.0100.0
12775.074.092.057.0
13827.041.026.0104.0
14350.0133.081.0434.0
15220.0190.0220.0368.0
PFM
ACGT
010.2140.1630.1970.425
020.1860.1070.4760.23
030.1340.6840.0650.116
040.1280.1970.0170.657
050.0560.1750.0390.729
060.0080.0090.0090.974
070.0060.9020.0060.086
080.0440.3410.0840.531
090.9620.0130.0150.01
100.1920.0030.7420.062
110.050.0280.8220.1
120.7770.0740.0920.057
130.8290.0410.0260.104
140.3510.1330.0810.435
150.220.190.220.369
PWM
ACGT
01-0.152-0.422-0.2340.527
02-0.291-0.8380.641-0.081
03-0.6161.003-1.326-0.758
04-0.661-0.234-2.5960.962
05-1.471-0.352-1.8191.066
06-3.252-3.154-3.1541.355
07-3.4821.278-3.482-1.052
08-1.7040.308-1.0750.75
091.342-2.837-2.709-3.065
10-0.26-3.9731.084-1.372
11-1.58-2.1341.185-0.904
121.129-1.199-0.986-1.453
131.194-1.772-2.204-0.865
140.336-0.623-1.1110.551
15-0.125-0.27-0.1250.386
Standard thresholds
P-value Threshold
0.001 4.17226
0.0005 5.12556
0.0001 7.09651