BATF3.H12INVIVO.2.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BATF3.H12INVIVO.2.SM.B
Gene (human)	BATF3 (GeneCards)
Gene synonyms (human)	SNFT
Gene (mouse)	Batf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	2
Quality	B

Motif length	14
Consensus	nbKRTGACGTMRbn
GC content	47.22%
Information content (bits; total / per base)	12.829 / 0.916
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9530

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.597	0.676	0.411	0.511	0.534	0.642	1.151	1.989	3.081	36.959
Mouse	1 (5)	0.585	0.594	0.4	0.411	0.516	0.519	1.149	1.174	2.77	4.523

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.99	0.988	0.885	0.882	0.743	0.756
Overall, 4 experiments	best	0.999	0.998	0.984	0.981	0.883	0.885
Methyl HT-SELEX, 2 experiments	median	0.99	0.988	0.885	0.882	0.743	0.756
Methyl HT-SELEX, 2 experiments	best	0.992	0.99	0.896	0.892	0.751	0.765
Non-Methyl HT-SELEX, 2 experiments	median	0.93	0.925	0.853	0.85	0.758	0.762
Non-Methyl HT-SELEX, 2 experiments	best	0.999	0.998	0.984	0.981	0.883	0.885

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	B-ATF-related {1.1.4} (TFClass)
TF subfamily	{1.1.4.0} (TFClass)
TFClass ID	TFClass: 1.1.4.0.3
HGNC	HGNC:28915
MGI	MGI:1925491
EntrezGene (human)	GeneID:55509 (SSTAR profile)
EntrezGene (mouse)	GeneID:381319 (SSTAR profile)
UniProt ID (human)	BATF3_HUMAN
UniProt ID (mouse)	BATF3_MOUSE
UniProt AC (human)	Q9NR55 (TFClass)
UniProt AC (mouse)	Q9D275 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	2

PCM	BATF3.H12INVIVO.2.SM.B.pcm
PWM	BATF3.H12INVIVO.2.SM.B.pwm
PFM	BATF3.H12INVIVO.2.SM.B.pfm
Alignment	BATF3.H12INVIVO.2.SM.B.words.tsv
Threshold to P-value map	BATF3.H12INVIVO.2.SM.B.thr
Motif in other formats
JASPAR format	BATF3.H12INVIVO.2.SM.B_jaspar_format.txt
MEME format	BATF3.H12INVIVO.2.SM.B_meme_format.meme
Transfac format	BATF3.H12INVIVO.2.SM.B_transfac_format.txt
Homer format	BATF3.H12INVIVO.2.SM.B_homer_format_0.001.txt BATF3.H12INVIVO.2.SM.B_homer_format_0.0005.txt BATF3.H12INVIVO.2.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3177.75	1693.75	2735.75	1922.75
02	1468.25	2062.25	1826.25	4173.25
03	1297.0	864.0	6046.0	1323.0
04	6540.0	757.0	2082.0	151.0
05	9.0	1.0	131.0	9389.0
06	8.0	1.0	9426.0	95.0
07	9522.0	0.0	8.0	0.0
08	5.0	7258.0	106.0	2161.0
09	398.0	33.0	9051.0	48.0
10	393.0	599.0	321.0	8217.0
11	1839.0	6072.0	1125.0	494.0
12	7500.0	425.0	910.0	695.0
13	1145.0	2547.0	1972.0	3866.0
14	2623.75	2729.75	2224.75	1951.75

PFM

	A	C	G	T
01	0.333	0.178	0.287	0.202
02	0.154	0.216	0.192	0.438
03	0.136	0.091	0.634	0.139
04	0.686	0.079	0.218	0.016
05	0.001	0.0	0.014	0.985
06	0.001	0.0	0.989	0.01
07	0.999	0.0	0.001	0.0
08	0.001	0.762	0.011	0.227
09	0.042	0.003	0.95	0.005
10	0.041	0.063	0.034	0.862
11	0.193	0.637	0.118	0.052
12	0.787	0.045	0.095	0.073
13	0.12	0.267	0.207	0.406
14	0.275	0.286	0.233	0.205

PWM

	A	C	G	T
01	0.288	-0.341	0.138	-0.214
02	-0.483	-0.144	-0.266	0.56
03	-0.607	-1.013	0.931	-0.587
04	1.009	-1.144	-0.135	-2.745
05	-5.353	-6.586	-2.884	1.371
06	-5.446	-6.586	1.375	-3.199
07	1.385	-6.948	-5.446	-6.948
08	-5.79	1.113	-3.092	-0.097
09	-1.785	-4.213	1.334	-3.859
10	-1.797	-1.378	-1.998	1.237
11	-0.259	0.935	-0.749	-1.57
12	1.146	-1.719	-0.961	-1.23
13	-0.732	0.067	-0.189	0.484
14	0.096	0.136	-0.068	-0.199

Standard thresholds

P-value	Threshold
0.001	3.61176
0.0005	4.83016
0.0001	7.17766