BATF3.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BATF3.H12INVIVO.0.P.B
Gene (human)	BATF3 (GeneCards)
Gene synonyms (human)	SNFT
Gene (mouse)	Batf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	18
Consensus	dnKhhnddWWTGASTMWn
GC content	39.28%
Information content (bits; total / per base)	11.474 / 0.637
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.911	0.931	0.824	0.873	0.885	0.909	3.252	3.619	172.921	311.398
Mouse	1 (5)	0.851	0.856	0.75	0.764	0.796	0.806	2.583	2.682	155.469	164.638

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.521	0.515	0.512	0.509	0.507	0.506
Overall, 4 experiments	best	0.526	0.519	0.515	0.511	0.51	0.508
Methyl HT-SELEX, 2 experiments	median	0.525	0.518	0.514	0.511	0.508	0.507
Methyl HT-SELEX, 2 experiments	best	0.526	0.519	0.515	0.511	0.51	0.508
Non-Methyl HT-SELEX, 2 experiments	median	0.513	0.51	0.506	0.506	0.502	0.503
Non-Methyl HT-SELEX, 2 experiments	best	0.518	0.513	0.511	0.508	0.508	0.506

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	B-ATF-related {1.1.4} (TFClass)
TF subfamily	{1.1.4.0} (TFClass)
TFClass ID	TFClass: 1.1.4.0.3
HGNC	HGNC:28915
MGI	MGI:1925491
EntrezGene (human)	GeneID:55509 (SSTAR profile)
EntrezGene (mouse)	GeneID:381319 (SSTAR profile)
UniProt ID (human)	BATF3_HUMAN
UniProt ID (mouse)	BATF3_MOUSE
UniProt AC (human)	Q9NR55 (TFClass)
UniProt AC (mouse)	Q9D275 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	2

PCM	BATF3.H12INVIVO.0.P.B.pcm
PWM	BATF3.H12INVIVO.0.P.B.pwm
PFM	BATF3.H12INVIVO.0.P.B.pfm
Alignment	BATF3.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	BATF3.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	BATF3.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	BATF3.H12INVIVO.0.P.B_meme_format.meme
Transfac format	BATF3.H12INVIVO.0.P.B_transfac_format.txt
Homer format	BATF3.H12INVIVO.0.P.B_homer_format_0.001.txt BATF3.H12INVIVO.0.P.B_homer_format_0.0005.txt BATF3.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	425.0	100.0	239.0	236.0
02	171.0	294.0	316.0	219.0
03	67.0	71.0	151.0	711.0
04	175.0	396.0	138.0	291.0
05	196.0	331.0	71.0	402.0
06	231.0	326.0	136.0	307.0
07	296.0	117.0	429.0	158.0
08	429.0	57.0	239.0	275.0
09	367.0	18.0	126.0	489.0
10	626.0	120.0	48.0	206.0
11	4.0	2.0	1.0	993.0
12	7.0	15.0	881.0	97.0
13	954.0	7.0	12.0	27.0
14	56.0	507.0	412.0	25.0
15	86.0	19.0	9.0	886.0
16	153.0	704.0	123.0	20.0
17	796.0	40.0	44.0	120.0
18	165.0	204.0	368.0	263.0

PFM

	A	C	G	T
01	0.425	0.1	0.239	0.236
02	0.171	0.294	0.316	0.219
03	0.067	0.071	0.151	0.711
04	0.175	0.396	0.138	0.291
05	0.196	0.331	0.071	0.402
06	0.231	0.326	0.136	0.307
07	0.296	0.117	0.429	0.158
08	0.429	0.057	0.239	0.275
09	0.367	0.018	0.126	0.489
10	0.626	0.12	0.048	0.206
11	0.004	0.002	0.001	0.993
12	0.007	0.015	0.881	0.097
13	0.954	0.007	0.012	0.027
14	0.056	0.507	0.412	0.025
15	0.086	0.019	0.009	0.886
16	0.153	0.704	0.123	0.02
17	0.796	0.04	0.044	0.12
18	0.165	0.204	0.368	0.263

PWM

	A	C	G	T
01	0.528	-0.906	-0.045	-0.057
02	-0.377	0.161	0.233	-0.131
03	-1.298	-1.242	-0.5	1.041
04	-0.354	0.457	-0.589	0.151
05	-0.241	0.279	-1.242	0.472
06	-0.078	0.264	-0.603	0.204
07	0.168	-0.752	0.537	-0.455
08	0.537	-1.455	-0.045	0.095
09	0.382	-2.546	-0.678	0.668
10	0.914	-0.727	-1.622	-0.192
11	-3.783	-4.213	-4.525	1.374
12	-3.362	-2.711	1.255	-0.936
13	1.334	-3.362	-2.909	-2.171
14	-1.473	0.704	0.497	-2.243
15	-1.054	-2.497	-3.156	1.26
16	-0.487	1.031	-0.702	-2.45
17	1.153	-1.797	-1.706	-0.727
18	-0.412	-0.202	0.384	0.05

Standard thresholds

P-value	Threshold
0.001	4.37641
0.0005	5.31151
0.0001	7.21771