BATF3.H12INVITRO.2.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BATF3.H12INVITRO.2.SM.B
Gene (human)	BATF3 (GeneCards)
Gene synonyms (human)	SNFT
Gene (mouse)	Batf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	2
Quality	B

Motif length	14
Consensus	nbSRTGACGTMAbn
GC content	50.37%
Information content (bits; total / per base)	14.634 / 1.045
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9858

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.575	0.646	0.403	0.501	0.52	0.613	1.107	1.873	4.06	30.959
Mouse	1 (5)	0.579	0.584	0.398	0.411	0.518	0.521	1.154	1.181	3.796	4.699

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.99	0.987	0.886	0.882	0.749	0.759
Overall, 4 experiments	best	0.999	0.998	0.986	0.983	0.889	0.889
Methyl HT-SELEX, 2 experiments	median	0.99	0.987	0.886	0.882	0.749	0.759
Methyl HT-SELEX, 2 experiments	best	0.992	0.99	0.899	0.895	0.759	0.769
Non-Methyl HT-SELEX, 2 experiments	median	0.933	0.928	0.858	0.854	0.766	0.768
Non-Methyl HT-SELEX, 2 experiments	best	0.999	0.998	0.986	0.983	0.889	0.889

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	B-ATF-related {1.1.4} (TFClass)
TF subfamily	{1.1.4.0} (TFClass)
TFClass ID	TFClass: 1.1.4.0.3
HGNC	HGNC:28915
MGI	MGI:1925491
EntrezGene (human)	GeneID:55509 (SSTAR profile)
EntrezGene (mouse)	GeneID:381319 (SSTAR profile)
UniProt ID (human)	BATF3_HUMAN
UniProt ID (mouse)	BATF3_MOUSE
UniProt AC (human)	Q9NR55 (TFClass)
UniProt AC (mouse)	Q9D275 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	2

PCM	BATF3.H12INVITRO.2.SM.B.pcm
PWM	BATF3.H12INVITRO.2.SM.B.pwm
PFM	BATF3.H12INVITRO.2.SM.B.pfm
Alignment	BATF3.H12INVITRO.2.SM.B.words.tsv
Threshold to P-value map	BATF3.H12INVITRO.2.SM.B.thr
Motif in other formats
JASPAR format	BATF3.H12INVITRO.2.SM.B_jaspar_format.txt
MEME format	BATF3.H12INVITRO.2.SM.B_meme_format.meme
Transfac format	BATF3.H12INVITRO.2.SM.B_transfac_format.txt
Homer format	BATF3.H12INVITRO.2.SM.B_homer_format_0.001.txt BATF3.H12INVITRO.2.SM.B_homer_format_0.0005.txt BATF3.H12INVITRO.2.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2895.75	1686.75	3474.75	1800.75
02	1062.0	2281.0	2153.0	4362.0
03	994.0	1011.0	6891.0	962.0
04	6529.0	924.0	2299.0	106.0
05	0.0	3.0	61.0	9794.0
06	7.0	2.0	9737.0	112.0
07	9852.0	0.0	4.0	2.0
08	0.0	9140.0	36.0	682.0
09	386.0	12.0	9460.0	0.0
10	54.0	297.0	113.0	9394.0
11	1596.0	7134.0	928.0	200.0
12	8534.0	152.0	738.0	434.0
13	1099.5	3471.5	2036.5	3250.5
14	2515.75	2756.75	2716.75	1868.75

PFM

	A	C	G	T
01	0.294	0.171	0.352	0.183
02	0.108	0.231	0.218	0.442
03	0.101	0.103	0.699	0.098
04	0.662	0.094	0.233	0.011
05	0.0	0.0	0.006	0.994
06	0.001	0.0	0.988	0.011
07	0.999	0.0	0.0	0.0
08	0.0	0.927	0.004	0.069
09	0.039	0.001	0.96	0.0
10	0.005	0.03	0.011	0.953
11	0.162	0.724	0.094	0.02
12	0.866	0.015	0.075	0.044
13	0.112	0.352	0.207	0.33
14	0.255	0.28	0.276	0.19

PWM

	A	C	G	T
01	0.161	-0.379	0.343	-0.313
02	-0.841	-0.077	-0.135	0.571
03	-0.907	-0.89	1.028	-0.939
04	0.974	-0.979	-0.069	-3.126
05	-6.978	-6.143	-3.663	1.379
06	-5.581	-6.352	1.373	-3.072
07	1.385	-6.978	-5.97	-6.352
08	-6.978	1.31	-4.165	-1.282
09	-1.849	-5.15	1.344	-6.978
10	-3.78	-2.109	-3.063	1.337
11	-0.434	1.062	-0.975	-2.501
12	1.241	-2.772	-1.204	-1.732
13	-0.806	0.342	-0.191	0.277
14	0.021	0.112	0.097	-0.276

Standard thresholds

P-value	Threshold
0.001	2.26731
0.0005	3.70866
0.0001	6.59991