BATF3.H12INVITRO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BATF3.H12INVITRO.1.P.B
Gene (human)	BATF3 (GeneCards)
Gene synonyms (human)	SNFT
Gene (mouse)	Batf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	9
Consensus	vTGACTCAd
GC content	39.39%
Information content (bits; total / per base)	10.647 / 1.183
Data sources	ChIP-Seq
Aligned words	1010

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.865	0.883	0.774	0.807	0.825	0.843	2.674	2.851	127.824	207.167
Mouse	1 (5)	0.797	0.809	0.702	0.714	0.75	0.761	2.288	2.341	91.357	102.42

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.608	0.574	0.581	0.555	0.56	0.542
Overall, 4 experiments	best	0.651	0.599	0.617	0.578	0.592	0.562
Methyl HT-SELEX, 2 experiments	median	0.608	0.574	0.581	0.555	0.56	0.542
Methyl HT-SELEX, 2 experiments	best	0.62	0.582	0.588	0.56	0.564	0.546
Non-Methyl HT-SELEX, 2 experiments	median	0.62	0.578	0.592	0.561	0.569	0.547
Non-Methyl HT-SELEX, 2 experiments	best	0.651	0.599	0.617	0.578	0.592	0.562

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	B-ATF-related {1.1.4} (TFClass)
TF subfamily	{1.1.4.0} (TFClass)
TFClass ID	TFClass: 1.1.4.0.3
HGNC	HGNC:28915
MGI	MGI:1925491
EntrezGene (human)	GeneID:55509 (SSTAR profile)
EntrezGene (mouse)	GeneID:381319 (SSTAR profile)
UniProt ID (human)	BATF3_HUMAN
UniProt ID (mouse)	BATF3_MOUSE
UniProt AC (human)	Q9NR55 (TFClass)
UniProt AC (mouse)	Q9D275 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	2

PCM	BATF3.H12INVITRO.1.P.B.pcm
PWM	BATF3.H12INVITRO.1.P.B.pwm
PFM	BATF3.H12INVITRO.1.P.B.pfm
Alignment	BATF3.H12INVITRO.1.P.B.words.tsv
Threshold to P-value map	BATF3.H12INVITRO.1.P.B.thr
Motif in other formats
JASPAR format	BATF3.H12INVITRO.1.P.B_jaspar_format.txt
MEME format	BATF3.H12INVITRO.1.P.B_meme_format.meme
Transfac format	BATF3.H12INVITRO.1.P.B_transfac_format.txt
Homer format	BATF3.H12INVITRO.1.P.B_homer_format_0.001.txt BATF3.H12INVITRO.1.P.B_homer_format_0.0005.txt BATF3.H12INVITRO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	539.0	210.0	152.0	109.0
02	12.0	5.0	7.0	986.0
03	7.0	46.0	865.0	92.0
04	946.0	12.0	24.0	28.0
05	0.0	910.0	0.0	100.0
06	61.0	5.0	31.0	913.0
07	108.0	855.0	40.0	7.0
08	915.0	52.0	7.0	36.0
09	221.0	118.0	242.0	429.0

PFM

	A	C	G	T
01	0.534	0.208	0.15	0.108
02	0.012	0.005	0.007	0.976
03	0.007	0.046	0.856	0.091
04	0.937	0.012	0.024	0.028
05	0.0	0.901	0.0	0.099
06	0.06	0.005	0.031	0.904
07	0.107	0.847	0.04	0.007
08	0.906	0.051	0.007	0.036
09	0.219	0.117	0.24	0.425

PWM

	A	C	G	T
01	0.755	-0.183	-0.503	-0.831
02	-2.919	-3.632	-3.372	1.357
03	-3.372	-1.673	1.226	-0.998
04	1.316	-2.919	-2.291	-2.146
05	-4.99	1.277	-4.99	-0.916
06	-1.399	-3.632	-2.05	1.28
07	-0.84	1.215	-1.807	-3.372
08	1.283	-1.554	-3.372	-1.908
09	-0.132	-0.753	-0.042	0.527

Standard thresholds

P-value	Threshold
0.001	4.5486
0.0005	5.500535
0.0001	7.3469