BATF.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BATF.H12INVITRO.0.P.D
Gene (human)	BATF (GeneCards)
Gene synonyms (human)
Gene (mouse)	Batf
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	dbThhhvdWWTGASTMWnn
GC content	39.61%
Information content (bits; total / per base)	12.643 / 0.665
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (26)	0.82	0.954	0.794	0.913	0.807	0.945	3.65	4.473	339.665	520.409
Mouse	31 (192)	0.896	0.947	0.826	0.907	0.883	0.939	3.521	4.446	265.403	532.149

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	B-ATF-related {1.1.4} (TFClass)
TF subfamily	{1.1.4.0} (TFClass)
TFClass ID	TFClass: 1.1.4.0.1
HGNC	HGNC:958
MGI	MGI:1859147
EntrezGene (human)	GeneID:10538 (SSTAR profile)
EntrezGene (mouse)	GeneID:53314 (SSTAR profile)
UniProt ID (human)	BATF_HUMAN
UniProt ID (mouse)	BATF_MOUSE
UniProt AC (human)	Q16520 (TFClass)
UniProt AC (mouse)	O35284 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 31 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	BATF.H12INVITRO.0.P.D.pcm
PWM	BATF.H12INVITRO.0.P.D.pwm
PFM	BATF.H12INVITRO.0.P.D.pfm
Alignment	BATF.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	BATF.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	BATF.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	BATF.H12INVITRO.0.P.D_meme_format.meme
Transfac format	BATF.H12INVITRO.0.P.D_transfac_format.txt
Homer format	BATF.H12INVITRO.0.P.D_homer_format_0.001.txt BATF.H12INVITRO.0.P.D_homer_format_0.0005.txt BATF.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	477.0	97.0	251.0	175.0
02	122.0	348.0	360.0	170.0
03	43.0	23.0	104.0	830.0
04	137.0	366.0	76.0	421.0
05	114.0	306.0	55.0	525.0
06	183.0	452.0	112.0	253.0
07	298.0	113.0	477.0	112.0
08	408.0	107.0	183.0	302.0
09	335.0	14.0	85.0	566.0
10	625.0	114.0	31.0	230.0
11	1.0	0.0	1.0	998.0
12	4.0	27.0	877.0	92.0
13	974.0	2.0	5.0	19.0
14	60.0	553.0	354.0	33.0
15	33.0	16.0	8.0	943.0
16	176.0	616.0	163.0	45.0
17	710.0	34.0	99.0	157.0
18	138.0	211.0	352.0	299.0
19	227.0	379.0	154.0	240.0

PFM

	A	C	G	T
01	0.477	0.097	0.251	0.175
02	0.122	0.348	0.36	0.17
03	0.043	0.023	0.104	0.83
04	0.137	0.366	0.076	0.421
05	0.114	0.306	0.055	0.525
06	0.183	0.452	0.112	0.253
07	0.298	0.113	0.477	0.112
08	0.408	0.107	0.183	0.302
09	0.335	0.014	0.085	0.566
10	0.625	0.114	0.031	0.23
11	0.001	0.0	0.001	0.998
12	0.004	0.027	0.877	0.092
13	0.974	0.002	0.005	0.019
14	0.06	0.553	0.354	0.033
15	0.033	0.016	0.008	0.943
16	0.176	0.616	0.163	0.045
17	0.71	0.034	0.099	0.157
18	0.138	0.211	0.352	0.299
19	0.227	0.379	0.154	0.24

PWM

	A	C	G	T
01	0.643	-0.936	0.004	-0.354
02	-0.71	0.329	0.363	-0.382
03	-1.728	-2.32	-0.867	1.195
04	-0.596	0.379	-1.175	0.518
05	-0.777	0.201	-1.49	0.738
06	-0.309	0.589	-0.795	0.012
07	0.175	-0.786	0.643	-0.795
08	0.487	-0.84	-0.309	0.188
09	0.291	-2.773	-1.066	0.813
10	0.912	-0.777	-2.04	-0.083
11	-4.525	-4.982	-4.525	1.379
12	-3.783	-2.171	1.25	-0.988
13	1.355	-4.213	-3.622	-2.497
14	-1.406	0.79	0.346	-1.981
15	-1.981	-2.653	-3.253	1.323
16	-0.348	0.898	-0.424	-1.684
17	1.039	-1.952	-0.916	-0.461
18	-0.589	-0.168	0.34	0.178
19	-0.096	0.414	-0.48	-0.041

Standard thresholds

P-value	Threshold
0.001	4.00246
0.0005	5.02196
0.0001	7.10276