MotifBARX2.H12INVIVO.0.SM.D
Gene (human)BARX2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barx2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusdWAATCATTAnbn
GC content25.34%
Information content (bits; total / per base)14.86 / 1.143
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9984

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.998 0.996 0.996 0.994 0.99 0.986
best 0.998 0.997 0.997 0.995 0.992 0.988
Methyl HT-SELEX, 1 experiments median 0.998 0.997 0.997 0.995 0.992 0.988
best 0.998 0.997 0.997 0.995 0.992 0.988
Non-Methyl HT-SELEX, 1 experiments median 0.997 0.995 0.996 0.993 0.989 0.984
best 0.997 0.995 0.996 0.993 0.989 0.984

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.893 0.26 0.899 0.564
batch 2 0.892 0.746 0.891 0.674
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARX {3.1.2.2} (TFClass)
TFClass IDTFClass: 3.1.2.2.2
HGNCHGNC:956
MGIMGI:109617
EntrezGene (human)GeneID:8538
(SSTAR profile)
EntrezGene (mouse)GeneID:12023
(SSTAR profile)
UniProt ID (human)BARX2_HUMAN
UniProt ID (mouse)BARX2_MOUSE
UniProt AC (human)Q9UMQ3
(TFClass)
UniProt AC (mouse)O08686
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
014763.75774.75782.753662.75
025804.75218.75192.753767.75
039505.053.054.0372.0
049675.0131.070.0108.0
0514.03544.08.06418.0
06531.08906.0547.00.0
079609.04.0371.00.0
081.03.00.09980.0
091.012.00.09971.0
109855.00.07.0122.0
113206.02023.02898.01857.0
121245.04102.02343.02294.0
131795.252890.252950.252348.25
PFM
ACGT
010.4770.0780.0780.367
020.5810.0220.0190.377
030.9520.0050.0050.037
040.9690.0130.0070.011
050.0010.3550.0010.643
060.0530.8920.0550.0
070.9620.00.0370.0
080.00.00.01.0
090.00.0010.00.999
100.9870.00.0010.012
110.3210.2030.290.186
120.1250.4110.2350.23
130.180.2890.2950.235
PWM
ACGT
010.646-1.168-1.1580.383
020.843-2.425-2.550.411
031.336-3.811-3.793-1.898
041.354-2.931-3.543-3.12
05-5.0320.35-5.4910.944
06-1.5441.271-1.515-6.99
071.347-5.982-1.901-6.99
08-6.629-6.155-6.991.385
09-6.629-5.163-6.991.384
101.373-6.99-5.593-3.001
110.25-0.210.149-0.295
12-0.6950.496-0.063-0.084
13-0.3290.1470.167-0.061
Standard thresholds
P-value Threshold
0.001 1.49441
0.0005 3.14351
0.0001 6.336775