Motif | BARX1.H12RSNP.1.S.D |
Gene (human) | BARX1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barx1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif | BARX1.H12RSNP.1.S.D |
Gene (human) | BARX1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barx1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif length | 16 |
Consensus | nnRhTAATKRbhhhhh |
GC content | 35.47% |
Information content (bits; total / per base) | 11.702 / 0.731 |
Data sources | HT-SELEX |
Aligned words | 7740 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 1 (7) | 0.73 | 0.753 | 0.541 | 0.617 | 0.644 | 0.647 | 1.564 | 1.651 | 14.796 | 24.432 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 2 experiments | median | 0.985 | 0.977 | 0.966 | 0.951 | 0.891 | 0.878 |
best | 0.986 | 0.979 | 0.966 | 0.953 | 0.896 | 0.881 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | BARX {3.1.2.2} (TFClass) |
TFClass ID | TFClass: 3.1.2.2.1 |
HGNC | HGNC:955 |
MGI | MGI:103124 |
EntrezGene (human) | GeneID:56033 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12022 (SSTAR profile) |
UniProt ID (human) | BARX1_HUMAN |
UniProt ID (mouse) | BARX1_MOUSE |
UniProt AC (human) | Q9HBU1 (TFClass) |
UniProt AC (mouse) | Q9ER42 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 1 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 0 |
PCM | BARX1.H12RSNP.1.S.D.pcm |
PWM | BARX1.H12RSNP.1.S.D.pwm |
PFM | BARX1.H12RSNP.1.S.D.pfm |
Alignment | BARX1.H12RSNP.1.S.D.words.tsv |
Threshold to P-value map | BARX1.H12RSNP.1.S.D.thr |
Motif in other formats | |
JASPAR format | BARX1.H12RSNP.1.S.D_jaspar_format.txt |
MEME format | BARX1.H12RSNP.1.S.D_meme_format.meme |
Transfac format | BARX1.H12RSNP.1.S.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1539.25 | 1567.25 | 2715.25 | 1918.25 |
02 | 1521.0 | 2402.0 | 2397.0 | 1420.0 |
03 | 1435.0 | 980.0 | 5018.0 | 307.0 |
04 | 858.0 | 2801.0 | 655.0 | 3426.0 |
05 | 0.0 | 3.0 | 0.0 | 7737.0 |
06 | 7740.0 | 0.0 | 0.0 | 0.0 |
07 | 7740.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 29.0 | 43.0 | 7668.0 |
09 | 1.0 | 1575.0 | 2445.0 | 3719.0 |
10 | 2534.0 | 120.0 | 4942.0 | 144.0 |
11 | 938.0 | 2906.0 | 2291.0 | 1605.0 |
12 | 1021.0 | 1941.0 | 616.0 | 4162.0 |
13 | 1538.0 | 1489.0 | 876.0 | 3837.0 |
14 | 3669.0 | 1750.0 | 570.0 | 1751.0 |
15 | 3641.0 | 1520.0 | 552.0 | 2027.0 |
16 | 1994.0 | 1083.0 | 643.0 | 4020.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.199 | 0.202 | 0.351 | 0.248 |
02 | 0.197 | 0.31 | 0.31 | 0.183 |
03 | 0.185 | 0.127 | 0.648 | 0.04 |
04 | 0.111 | 0.362 | 0.085 | 0.443 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.004 | 0.006 | 0.991 |
09 | 0.0 | 0.203 | 0.316 | 0.48 |
10 | 0.327 | 0.016 | 0.639 | 0.019 |
11 | 0.121 | 0.375 | 0.296 | 0.207 |
12 | 0.132 | 0.251 | 0.08 | 0.538 |
13 | 0.199 | 0.192 | 0.113 | 0.496 |
14 | 0.474 | 0.226 | 0.074 | 0.226 |
15 | 0.47 | 0.196 | 0.071 | 0.262 |
16 | 0.258 | 0.14 | 0.083 | 0.519 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.229 | -0.211 | 0.338 | -0.009 |
02 | -0.24 | 0.216 | 0.214 | -0.309 |
03 | -0.299 | -0.679 | 0.952 | -1.835 |
04 | -0.812 | 0.37 | -1.081 | 0.571 |
05 | -6.763 | -5.913 | -6.763 | 1.385 |
06 | 1.385 | -6.763 | -6.763 | -6.763 |
07 | 1.385 | -6.763 | -6.763 | -6.763 |
08 | -6.763 | -4.127 | -3.757 | 1.376 |
09 | -6.394 | -0.206 | 0.234 | 0.653 |
10 | 0.269 | -2.763 | 0.937 | -2.584 |
11 | -0.723 | 0.406 | 0.169 | -0.187 |
12 | -0.638 | 0.003 | -1.142 | 0.765 |
13 | -0.229 | -0.262 | -0.791 | 0.684 |
14 | 0.639 | -0.1 | -1.219 | -0.1 |
15 | 0.632 | -0.241 | -1.251 | 0.046 |
16 | 0.03 | -0.579 | -1.099 | 0.731 |
P-value | Threshold |
---|---|
0.001 | 4.05306 |
0.0005 | 5.44296 |
0.0001 | 7.56091 |