MotifBARX1.H12INVIVO.1.S.B
Gene (human)BARX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barx1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length19
ConsensusnRbTAATKRnhhhhWddnn
GC content32.76%
Information content (bits; total / per base)11.853 / 0.624
Data sourcesHT-SELEX
Aligned words8853

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.722 0.758 0.522 0.621 0.646 0.654 1.604 1.675 20.77 31.071

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.988 0.981 0.963 0.95 0.87 0.862
best 0.99 0.985 0.966 0.954 0.873 0.863
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARX {3.1.2.2} (TFClass)
TFClass IDTFClass: 3.1.2.2.1
HGNCHGNC:955
MGIMGI:103124
EntrezGene (human)GeneID:56033
(SSTAR profile)
EntrezGene (mouse)GeneID:12022
(SSTAR profile)
UniProt ID (human)BARX1_HUMAN
UniProt ID (mouse)BARX1_MOUSE
UniProt AC (human)Q9HBU1
(TFClass)
UniProt AC (mouse)Q9ER42
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
011919.752337.752865.751729.75
021633.751143.755432.75642.75
03967.02862.01847.03177.0
043.0160.00.08690.0
058844.04.04.01.0
068853.00.00.00.0
071.067.0103.08682.0
082.01767.02821.04263.0
093123.0244.05154.0332.0
101398.02774.02955.01726.0
111306.02295.0830.04422.0
121742.01534.01202.04375.0
134462.01253.0757.02381.0
144354.01001.0540.02958.0
152554.0559.0422.05318.0
163645.0857.01009.03342.0
173727.0617.02032.02477.0
181898.751834.751666.753452.75
191620.52204.51953.53074.5
PFM
ACGT
010.2170.2640.3240.195
020.1850.1290.6140.073
030.1090.3230.2090.359
040.00.0180.00.982
050.9990.00.00.0
061.00.00.00.0
070.00.0080.0120.981
080.00.20.3190.482
090.3530.0280.5820.038
100.1580.3130.3340.195
110.1480.2590.0940.499
120.1970.1730.1360.494
130.5040.1420.0860.269
140.4920.1130.0610.334
150.2880.0630.0480.601
160.4120.0970.1140.377
170.4210.070.230.28
180.2140.2070.1880.39
190.1830.2490.2210.347
PWM
ACGT
01-0.1420.0550.258-0.246
02-0.303-0.6590.897-1.234
03-0.8270.257-0.1810.361
04-6.041-2.614-6.8831.367
051.385-5.867-5.867-6.518
061.386-6.883-6.883-6.883
07-6.518-3.465-3.0471.366
08-6.251-0.2250.2420.655
090.344-2.1970.845-1.891
10-0.4590.2260.289-0.248
11-0.5270.036-0.9790.692
12-0.239-0.366-0.610.681
130.701-0.568-1.0710.073
140.676-0.792-1.4070.29
150.143-1.373-1.6530.876
160.498-0.947-0.7840.412
170.521-1.275-0.0850.112
18-0.153-0.187-0.2830.444
19-0.311-0.004-0.1250.328
Standard thresholds
P-value Threshold
0.001 4.08331
0.0005 5.30936
0.0001 7.44541