Motif | BARX1.H12INVIVO.1.S.B |
Gene (human) | BARX1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barx1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | BARX1.H12INVIVO.1.S.B |
Gene (human) | BARX1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barx1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 19 |
Consensus | nRbTAATKRnhhhhWddnn |
GC content | 32.76% |
Information content (bits; total / per base) | 11.853 / 0.624 |
Data sources | HT-SELEX |
Aligned words | 8853 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 1 (7) | 0.722 | 0.758 | 0.522 | 0.621 | 0.646 | 0.654 | 1.604 | 1.675 | 20.77 | 31.071 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 2 experiments | median | 0.988 | 0.981 | 0.963 | 0.95 | 0.87 | 0.862 |
best | 0.99 | 0.985 | 0.966 | 0.954 | 0.873 | 0.863 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | BARX {3.1.2.2} (TFClass) |
TFClass ID | TFClass: 3.1.2.2.1 |
HGNC | HGNC:955 |
MGI | MGI:103124 |
EntrezGene (human) | GeneID:56033 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12022 (SSTAR profile) |
UniProt ID (human) | BARX1_HUMAN |
UniProt ID (mouse) | BARX1_MOUSE |
UniProt AC (human) | Q9HBU1 (TFClass) |
UniProt AC (mouse) | Q9ER42 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 1 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 0 |
PCM | BARX1.H12INVIVO.1.S.B.pcm |
PWM | BARX1.H12INVIVO.1.S.B.pwm |
PFM | BARX1.H12INVIVO.1.S.B.pfm |
Alignment | BARX1.H12INVIVO.1.S.B.words.tsv |
Threshold to P-value map | BARX1.H12INVIVO.1.S.B.thr |
Motif in other formats | |
JASPAR format | BARX1.H12INVIVO.1.S.B_jaspar_format.txt |
MEME format | BARX1.H12INVIVO.1.S.B_meme_format.meme |
Transfac format | BARX1.H12INVIVO.1.S.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1919.75 | 2337.75 | 2865.75 | 1729.75 |
02 | 1633.75 | 1143.75 | 5432.75 | 642.75 |
03 | 967.0 | 2862.0 | 1847.0 | 3177.0 |
04 | 3.0 | 160.0 | 0.0 | 8690.0 |
05 | 8844.0 | 4.0 | 4.0 | 1.0 |
06 | 8853.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 67.0 | 103.0 | 8682.0 |
08 | 2.0 | 1767.0 | 2821.0 | 4263.0 |
09 | 3123.0 | 244.0 | 5154.0 | 332.0 |
10 | 1398.0 | 2774.0 | 2955.0 | 1726.0 |
11 | 1306.0 | 2295.0 | 830.0 | 4422.0 |
12 | 1742.0 | 1534.0 | 1202.0 | 4375.0 |
13 | 4462.0 | 1253.0 | 757.0 | 2381.0 |
14 | 4354.0 | 1001.0 | 540.0 | 2958.0 |
15 | 2554.0 | 559.0 | 422.0 | 5318.0 |
16 | 3645.0 | 857.0 | 1009.0 | 3342.0 |
17 | 3727.0 | 617.0 | 2032.0 | 2477.0 |
18 | 1898.75 | 1834.75 | 1666.75 | 3452.75 |
19 | 1620.5 | 2204.5 | 1953.5 | 3074.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.217 | 0.264 | 0.324 | 0.195 |
02 | 0.185 | 0.129 | 0.614 | 0.073 |
03 | 0.109 | 0.323 | 0.209 | 0.359 |
04 | 0.0 | 0.018 | 0.0 | 0.982 |
05 | 0.999 | 0.0 | 0.0 | 0.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.008 | 0.012 | 0.981 |
08 | 0.0 | 0.2 | 0.319 | 0.482 |
09 | 0.353 | 0.028 | 0.582 | 0.038 |
10 | 0.158 | 0.313 | 0.334 | 0.195 |
11 | 0.148 | 0.259 | 0.094 | 0.499 |
12 | 0.197 | 0.173 | 0.136 | 0.494 |
13 | 0.504 | 0.142 | 0.086 | 0.269 |
14 | 0.492 | 0.113 | 0.061 | 0.334 |
15 | 0.288 | 0.063 | 0.048 | 0.601 |
16 | 0.412 | 0.097 | 0.114 | 0.377 |
17 | 0.421 | 0.07 | 0.23 | 0.28 |
18 | 0.214 | 0.207 | 0.188 | 0.39 |
19 | 0.183 | 0.249 | 0.221 | 0.347 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.142 | 0.055 | 0.258 | -0.246 |
02 | -0.303 | -0.659 | 0.897 | -1.234 |
03 | -0.827 | 0.257 | -0.181 | 0.361 |
04 | -6.041 | -2.614 | -6.883 | 1.367 |
05 | 1.385 | -5.867 | -5.867 | -6.518 |
06 | 1.386 | -6.883 | -6.883 | -6.883 |
07 | -6.518 | -3.465 | -3.047 | 1.366 |
08 | -6.251 | -0.225 | 0.242 | 0.655 |
09 | 0.344 | -2.197 | 0.845 | -1.891 |
10 | -0.459 | 0.226 | 0.289 | -0.248 |
11 | -0.527 | 0.036 | -0.979 | 0.692 |
12 | -0.239 | -0.366 | -0.61 | 0.681 |
13 | 0.701 | -0.568 | -1.071 | 0.073 |
14 | 0.676 | -0.792 | -1.407 | 0.29 |
15 | 0.143 | -1.373 | -1.653 | 0.876 |
16 | 0.498 | -0.947 | -0.784 | 0.412 |
17 | 0.521 | -1.275 | -0.085 | 0.112 |
18 | -0.153 | -0.187 | -0.283 | 0.444 |
19 | -0.311 | -0.004 | -0.125 | 0.328 |
P-value | Threshold |
---|---|
0.001 | 4.08331 |
0.0005 | 5.30936 |
0.0001 | 7.44541 |