BARX1.H12INVIVO.1.S.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BARX1.H12INVIVO.1.S.B
Gene (human)	BARX1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Barx1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	19
Consensus	nRbTAATKRnhhhhWddnn
GC content	32.76%
Information content (bits; total / per base)	11.853 / 0.624
Data sources	HT-SELEX
Aligned words	8853

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	1 (7)	0.722	0.758	0.522	0.621	0.646	0.654	1.604	1.675	20.77	31.071

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.988	0.981	0.963	0.95	0.87	0.862
Non-Methyl HT-SELEX, 2 experiments	best	0.99	0.985	0.966	0.954	0.873	0.863

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	NK-related {3.1.2} (TFClass)
TF subfamily	BARX {3.1.2.2} (TFClass)
TFClass ID	TFClass: 3.1.2.2.1
HGNC	HGNC:955
MGI	MGI:103124
EntrezGene (human)	GeneID:56033 (SSTAR profile)
EntrezGene (mouse)	GeneID:12022 (SSTAR profile)
UniProt ID (human)	BARX1_HUMAN
UniProt ID (mouse)	BARX1_MOUSE
UniProt AC (human)	Q9HBU1 (TFClass)
UniProt AC (mouse)	Q9ER42 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	BARX1.H12INVIVO.1.S.B.pcm
PWM	BARX1.H12INVIVO.1.S.B.pwm
PFM	BARX1.H12INVIVO.1.S.B.pfm
Alignment	BARX1.H12INVIVO.1.S.B.words.tsv
Threshold to P-value map	BARX1.H12INVIVO.1.S.B.thr
Motif in other formats
JASPAR format	BARX1.H12INVIVO.1.S.B_jaspar_format.txt
MEME format	BARX1.H12INVIVO.1.S.B_meme_format.meme
Transfac format	BARX1.H12INVIVO.1.S.B_transfac_format.txt
Homer format	BARX1.H12INVIVO.1.S.B_homer_format_0.001.txt BARX1.H12INVIVO.1.S.B_homer_format_0.0005.txt BARX1.H12INVIVO.1.S.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1919.75	2337.75	2865.75	1729.75
02	1633.75	1143.75	5432.75	642.75
03	967.0	2862.0	1847.0	3177.0
04	3.0	160.0	0.0	8690.0
05	8844.0	4.0	4.0	1.0
06	8853.0	0.0	0.0	0.0
07	1.0	67.0	103.0	8682.0
08	2.0	1767.0	2821.0	4263.0
09	3123.0	244.0	5154.0	332.0
10	1398.0	2774.0	2955.0	1726.0
11	1306.0	2295.0	830.0	4422.0
12	1742.0	1534.0	1202.0	4375.0
13	4462.0	1253.0	757.0	2381.0
14	4354.0	1001.0	540.0	2958.0
15	2554.0	559.0	422.0	5318.0
16	3645.0	857.0	1009.0	3342.0
17	3727.0	617.0	2032.0	2477.0
18	1898.75	1834.75	1666.75	3452.75
19	1620.5	2204.5	1953.5	3074.5

PFM

	A	C	G	T
01	0.217	0.264	0.324	0.195
02	0.185	0.129	0.614	0.073
03	0.109	0.323	0.209	0.359
04	0.0	0.018	0.0	0.982
05	0.999	0.0	0.0	0.0
06	1.0	0.0	0.0	0.0
07	0.0	0.008	0.012	0.981
08	0.0	0.2	0.319	0.482
09	0.353	0.028	0.582	0.038
10	0.158	0.313	0.334	0.195
11	0.148	0.259	0.094	0.499
12	0.197	0.173	0.136	0.494
13	0.504	0.142	0.086	0.269
14	0.492	0.113	0.061	0.334
15	0.288	0.063	0.048	0.601
16	0.412	0.097	0.114	0.377
17	0.421	0.07	0.23	0.28
18	0.214	0.207	0.188	0.39
19	0.183	0.249	0.221	0.347

PWM

	A	C	G	T
01	-0.142	0.055	0.258	-0.246
02	-0.303	-0.659	0.897	-1.234
03	-0.827	0.257	-0.181	0.361
04	-6.041	-2.614	-6.883	1.367
05	1.385	-5.867	-5.867	-6.518
06	1.386	-6.883	-6.883	-6.883
07	-6.518	-3.465	-3.047	1.366
08	-6.251	-0.225	0.242	0.655
09	0.344	-2.197	0.845	-1.891
10	-0.459	0.226	0.289	-0.248
11	-0.527	0.036	-0.979	0.692
12	-0.239	-0.366	-0.61	0.681
13	0.701	-0.568	-1.071	0.073
14	0.676	-0.792	-1.407	0.29
15	0.143	-1.373	-1.653	0.876
16	0.498	-0.947	-0.784	0.412
17	0.521	-1.275	-0.085	0.112
18	-0.153	-0.187	-0.283	0.444
19	-0.311	-0.004	-0.125	0.328

Standard thresholds

P-value	Threshold
0.001	4.08331
0.0005	5.30936
0.0001	7.44541