MotifBARX1.H12INVIVO.0.P.C
Gene (human)BARX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barx1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length11
ConsensusnbWAATKSTTW
GC content28.99%
Information content (bits; total / per base)10.628 / 0.966
Data sourcesChIP-Seq
Aligned words132

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.807 0.849 0.704 0.771 0.75 0.774 2.345 2.576 35.409 51.244

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.919 0.888 0.842 0.807 0.736 0.72
best 0.919 0.888 0.842 0.807 0.74 0.722
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARX {3.1.2.2} (TFClass)
TFClass IDTFClass: 3.1.2.2.1
HGNCHGNC:955
MGIMGI:103124
EntrezGene (human)GeneID:56033
(SSTAR profile)
EntrezGene (mouse)GeneID:12022
(SSTAR profile)
UniProt ID (human)BARX1_HUMAN
UniProt ID (mouse)BARX1_MOUSE
UniProt AC (human)Q9HBU1
(TFClass)
UniProt AC (mouse)Q9ER42
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
0120.034.038.040.0
0219.058.027.028.0
0329.05.02.096.0
04129.00.02.01.0
05132.00.00.00.0
065.02.023.0102.0
075.02.073.052.0
0815.024.084.09.0
092.022.00.0108.0
104.02.03.0123.0
1119.07.013.093.0
PFM
ACGT
010.1520.2580.2880.303
020.1440.4390.2050.212
030.220.0380.0150.727
040.9770.00.0150.008
051.00.00.00.0
060.0380.0150.1740.773
070.0380.0150.5530.394
080.1140.1820.6360.068
090.0150.1670.00.818
100.030.0150.0230.932
110.1440.0530.0980.705
PWM
ACGT
01-0.4780.0290.1360.186
02-0.5260.548-0.193-0.158
03-0.124-1.705-2.3631.044
041.336-3.333-2.363-2.735
051.359-3.333-3.333-3.333
06-1.705-2.363-0.3461.104
07-1.705-2.3630.7740.442
08-0.747-0.3050.912-1.208
09-2.363-0.388-3.3331.161
10-1.88-2.363-2.0931.289
11-0.526-1.426-0.8781.013
Standard thresholds
P-value Threshold
0.001 4.779415
0.0005 5.6191
0.0001 7.29885