MotifBARX1.H12INVITRO.1.S.B
Gene (human)BARX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barx1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length16
ConsensusnnRhTAATKRbhhhhh
GC content35.47%
Information content (bits; total / per base)11.702 / 0.731
Data sourcesHT-SELEX
Aligned words7740

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.73 0.753 0.541 0.617 0.644 0.647 1.564 1.651 14.796 24.432

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.985 0.977 0.966 0.951 0.891 0.878
best 0.986 0.979 0.966 0.953 0.896 0.881
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARX {3.1.2.2} (TFClass)
TFClass IDTFClass: 3.1.2.2.1
HGNCHGNC:955
MGIMGI:103124
EntrezGene (human)GeneID:56033
(SSTAR profile)
EntrezGene (mouse)GeneID:12022
(SSTAR profile)
UniProt ID (human)BARX1_HUMAN
UniProt ID (mouse)BARX1_MOUSE
UniProt AC (human)Q9HBU1
(TFClass)
UniProt AC (mouse)Q9ER42
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
011539.251567.252715.251918.25
021521.02402.02397.01420.0
031435.0980.05018.0307.0
04858.02801.0655.03426.0
050.03.00.07737.0
067740.00.00.00.0
077740.00.00.00.0
080.029.043.07668.0
091.01575.02445.03719.0
102534.0120.04942.0144.0
11938.02906.02291.01605.0
121021.01941.0616.04162.0
131538.01489.0876.03837.0
143669.01750.0570.01751.0
153641.01520.0552.02027.0
161994.01083.0643.04020.0
PFM
ACGT
010.1990.2020.3510.248
020.1970.310.310.183
030.1850.1270.6480.04
040.1110.3620.0850.443
050.00.00.01.0
061.00.00.00.0
071.00.00.00.0
080.00.0040.0060.991
090.00.2030.3160.48
100.3270.0160.6390.019
110.1210.3750.2960.207
120.1320.2510.080.538
130.1990.1920.1130.496
140.4740.2260.0740.226
150.470.1960.0710.262
160.2580.140.0830.519
PWM
ACGT
01-0.229-0.2110.338-0.009
02-0.240.2160.214-0.309
03-0.299-0.6790.952-1.835
04-0.8120.37-1.0810.571
05-6.763-5.913-6.7631.385
061.385-6.763-6.763-6.763
071.385-6.763-6.763-6.763
08-6.763-4.127-3.7571.376
09-6.394-0.2060.2340.653
100.269-2.7630.937-2.584
11-0.7230.4060.169-0.187
12-0.6380.003-1.1420.765
13-0.229-0.262-0.7910.684
140.639-0.1-1.219-0.1
150.632-0.241-1.2510.046
160.03-0.579-1.0990.731
Standard thresholds
P-value Threshold
0.001 4.05306
0.0005 5.44296
0.0001 7.56091