Motif | BARX1.H12CORE.0.P.C |
Gene (human) | BARX1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barx1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif | BARX1.H12CORE.0.P.C |
Gene (human) | BARX1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barx1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif length | 11 |
Consensus | nbWAATKSTTW |
GC content | 28.99% |
Information content (bits; total / per base) | 10.628 / 0.966 |
Data sources | ChIP-Seq |
Aligned words | 132 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 1 (7) | 0.807 | 0.849 | 0.704 | 0.771 | 0.75 | 0.774 | 2.345 | 2.576 | 35.409 | 51.244 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 2 experiments | median | 0.919 | 0.888 | 0.842 | 0.807 | 0.736 | 0.72 |
best | 0.919 | 0.888 | 0.842 | 0.807 | 0.74 | 0.722 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | BARX {3.1.2.2} (TFClass) |
TFClass ID | TFClass: 3.1.2.2.1 |
HGNC | HGNC:955 |
MGI | MGI:103124 |
EntrezGene (human) | GeneID:56033 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12022 (SSTAR profile) |
UniProt ID (human) | BARX1_HUMAN |
UniProt ID (mouse) | BARX1_MOUSE |
UniProt AC (human) | Q9HBU1 (TFClass) |
UniProt AC (mouse) | Q9ER42 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 1 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 0 |
PCM | BARX1.H12CORE.0.P.C.pcm |
PWM | BARX1.H12CORE.0.P.C.pwm |
PFM | BARX1.H12CORE.0.P.C.pfm |
Alignment | BARX1.H12CORE.0.P.C.words.tsv |
Threshold to P-value map | BARX1.H12CORE.0.P.C.thr |
Motif in other formats | |
JASPAR format | BARX1.H12CORE.0.P.C_jaspar_format.txt |
MEME format | BARX1.H12CORE.0.P.C_meme_format.meme |
Transfac format | BARX1.H12CORE.0.P.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 20.0 | 34.0 | 38.0 | 40.0 |
02 | 19.0 | 58.0 | 27.0 | 28.0 |
03 | 29.0 | 5.0 | 2.0 | 96.0 |
04 | 129.0 | 0.0 | 2.0 | 1.0 |
05 | 132.0 | 0.0 | 0.0 | 0.0 |
06 | 5.0 | 2.0 | 23.0 | 102.0 |
07 | 5.0 | 2.0 | 73.0 | 52.0 |
08 | 15.0 | 24.0 | 84.0 | 9.0 |
09 | 2.0 | 22.0 | 0.0 | 108.0 |
10 | 4.0 | 2.0 | 3.0 | 123.0 |
11 | 19.0 | 7.0 | 13.0 | 93.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.152 | 0.258 | 0.288 | 0.303 |
02 | 0.144 | 0.439 | 0.205 | 0.212 |
03 | 0.22 | 0.038 | 0.015 | 0.727 |
04 | 0.977 | 0.0 | 0.015 | 0.008 |
05 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 0.038 | 0.015 | 0.174 | 0.773 |
07 | 0.038 | 0.015 | 0.553 | 0.394 |
08 | 0.114 | 0.182 | 0.636 | 0.068 |
09 | 0.015 | 0.167 | 0.0 | 0.818 |
10 | 0.03 | 0.015 | 0.023 | 0.932 |
11 | 0.144 | 0.053 | 0.098 | 0.705 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.478 | 0.029 | 0.136 | 0.186 |
02 | -0.526 | 0.548 | -0.193 | -0.158 |
03 | -0.124 | -1.705 | -2.363 | 1.044 |
04 | 1.336 | -3.333 | -2.363 | -2.735 |
05 | 1.359 | -3.333 | -3.333 | -3.333 |
06 | -1.705 | -2.363 | -0.346 | 1.104 |
07 | -1.705 | -2.363 | 0.774 | 0.442 |
08 | -0.747 | -0.305 | 0.912 | -1.208 |
09 | -2.363 | -0.388 | -3.333 | 1.161 |
10 | -1.88 | -2.363 | -2.093 | 1.289 |
11 | -0.526 | -1.426 | -0.878 | 1.013 |
P-value | Threshold |
---|---|
0.001 | 4.779415 |
0.0005 | 5.6191 |
0.0001 | 7.29885 |