MotifBARH2.H12INVIVO.0.SM.D
Gene (human)BARHL2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barhl2
Gene synonyms (mouse)Barh1, Mbh1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusndnCRWTTARnn
GC content39.15%
Information content (bits; total / per base)9.703 / 0.809
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words8912

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.966 0.946 0.942 0.91 0.912 0.876
best 0.994 0.989 0.986 0.979 0.972 0.96
Methyl HT-SELEX, 2 experiments median 0.98 0.967 0.966 0.948 0.942 0.919
best 0.994 0.989 0.986 0.979 0.967 0.954
Non-Methyl HT-SELEX, 6 experiments median 0.961 0.937 0.933 0.902 0.866 0.84
best 0.992 0.987 0.986 0.978 0.972 0.96
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARHL {3.1.2.1} (TFClass)
TFClass IDTFClass: 3.1.2.1.2
HGNCHGNC:954
MGIMGI:1859314
EntrezGene (human)GeneID:343472
(SSTAR profile)
EntrezGene (mouse)GeneID:104382
(SSTAR profile)
UniProt ID (human)BARH2_HUMAN
UniProt ID (mouse)BARH2_MOUSE
UniProt AC (human)Q9NY43
(TFClass)
UniProt AC (mouse)Q8VIB5
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 6
Methyl-HT-SELEX 2
PCM
ACGT
012238.752028.752617.752026.75
023701.01446.02269.01496.0
031735.02970.02216.01991.0
04138.07994.063.0717.0
054558.0660.03639.055.0
065182.0121.03.03606.0
070.00.00.08912.0
080.00.00.08912.0
098890.00.021.01.0
102609.0506.05048.0749.0
111281.03009.02433.02189.0
122323.01885.02936.01768.0
PFM
ACGT
010.2510.2280.2940.227
020.4150.1620.2550.168
030.1950.3330.2490.223
040.0150.8970.0070.08
050.5110.0740.4080.006
060.5810.0140.00.405
070.00.00.01.0
080.00.00.01.0
090.9980.00.0020.0
100.2930.0570.5660.084
110.1440.3380.2730.246
120.2610.2120.3290.198
PWM
ACGT
010.005-0.0940.161-0.095
020.507-0.4320.018-0.398
03-0.250.287-0.005-0.112
04-2.7661.277-3.531-1.132
050.715-1.2140.49-3.662
060.844-2.895-6.0470.481
07-6.888-6.888-6.8881.386
08-6.888-6.888-6.8881.386
091.383-6.888-4.563-6.524
100.158-1.4790.817-1.088
11-0.5530.30.088-0.018
120.042-0.1670.276-0.231
Standard thresholds
P-value Threshold
0.001 5.14931
0.0005 6.162125
0.0001 7.606025