MotifBARH2.H12INVITRO.1.S.B
Gene (human)BARHL2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barhl2
Gene synonyms (mouse)Barh1, Mbh1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length20
ConsensusnbhnWWWddbvbCRWTTARn
GC content37.33%
Information content (bits; total / per base)14.061 / 0.703
Data sourcesHT-SELEX
Aligned words8049

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.963 0.94 0.938 0.908 0.886 0.85
best 0.996 0.994 0.987 0.983 0.931 0.924
Methyl HT-SELEX, 2 experiments median 0.963 0.94 0.938 0.908 0.894 0.86
best 0.963 0.941 0.942 0.912 0.899 0.865
Non-Methyl HT-SELEX, 6 experiments median 0.959 0.935 0.936 0.903 0.854 0.835
best 0.996 0.994 0.987 0.983 0.931 0.924
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARHL {3.1.2.1} (TFClass)
TFClass IDTFClass: 3.1.2.1.2
HGNCHGNC:954
MGIMGI:1859314
EntrezGene (human)GeneID:343472
(SSTAR profile)
EntrezGene (mouse)GeneID:104382
(SSTAR profile)
UniProt ID (human)BARH2_HUMAN
UniProt ID (mouse)BARH2_MOUSE
UniProt AC (human)Q9NY43
(TFClass)
UniProt AC (mouse)Q8VIB5
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 6
Methyl-HT-SELEX 2
PCM
ACGT
011981.02305.01851.01912.0
021469.253312.251618.251649.25
031363.03989.01195.01502.0
042536.01579.01258.02676.0
053303.0471.092.04183.0
064391.020.038.03600.0
074347.0100.0186.03416.0
083926.0429.01022.02672.0
091282.01025.03126.02616.0
10621.01733.04656.01039.0
113742.0619.03117.0571.0
12787.03337.01704.02221.0
1316.07642.05.0386.0
144878.0254.02896.021.0
154777.0387.02.02883.0
161.00.00.08048.0
1780.08.01.07960.0
187985.00.034.030.0
191947.0410.05159.0533.0
201441.752384.752120.752101.75
PFM
ACGT
010.2460.2860.230.238
020.1830.4120.2010.205
030.1690.4960.1480.187
040.3150.1960.1560.332
050.410.0590.0110.52
060.5460.0020.0050.447
070.540.0120.0230.424
080.4880.0530.1270.332
090.1590.1270.3880.325
100.0770.2150.5780.129
110.4650.0770.3870.071
120.0980.4150.2120.276
130.0020.9490.0010.048
140.6060.0320.360.003
150.5930.0480.00.358
160.00.00.01.0
170.010.0010.00.989
180.9920.00.0040.004
190.2420.0510.6410.066
200.1790.2960.2630.261
PWM
ACGT
01-0.0160.136-0.083-0.051
02-0.3140.498-0.218-0.199
03-0.3890.684-0.52-0.292
040.231-0.242-0.4690.285
050.495-1.449-3.0620.731
060.78-4.506-3.9130.581
070.77-2.981-2.370.529
080.668-1.541-0.6760.283
09-0.45-0.6730.440.262
10-1.173-0.1490.838-0.66
110.62-1.1760.437-1.257
12-0.9370.505-0.1660.099
13-4.7041.334-5.627-1.646
140.885-2.0620.364-4.462
150.864-1.644-6.1620.359
16-6.43-6.798-6.7981.385
17-3.198-5.281-6.431.374
181.377-6.798-4.018-4.135
19-0.033-1.5860.941-1.325
20-0.3330.170.0520.043
Standard thresholds
P-value Threshold
0.001 2.58311
0.0005 4.00901
0.0001 6.86491