| Motif | BARH2.H12INVITRO.0.SM.B |
| Gene (human) | BARHL2 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Barhl2 |
| Gene synonyms (mouse) | Barh1, Mbh1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | BARH2.H12INVITRO.0.SM.B |
| Gene (human) | BARHL2 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Barhl2 |
| Gene synonyms (mouse) | Barh1, Mbh1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 12 |
| Consensus | ndnCRWTTARnn |
| GC content | 39.15% |
| Information content (bits; total / per base) | 9.703 / 0.809 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 8912 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 8 experiments | median | 0.966 | 0.946 | 0.942 | 0.91 | 0.912 | 0.876 |
| best | 0.994 | 0.989 | 0.986 | 0.979 | 0.972 | 0.96 | |
| Methyl HT-SELEX, 2 experiments | median | 0.98 | 0.967 | 0.966 | 0.948 | 0.942 | 0.919 |
| best | 0.994 | 0.989 | 0.986 | 0.979 | 0.967 | 0.954 | |
| Non-Methyl HT-SELEX, 6 experiments | median | 0.961 | 0.937 | 0.933 | 0.902 | 0.866 | 0.84 |
| best | 0.992 | 0.987 | 0.986 | 0.978 | 0.972 | 0.96 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | NK-related {3.1.2} (TFClass) |
| TF subfamily | BARHL {3.1.2.1} (TFClass) |
| TFClass ID | TFClass: 3.1.2.1.2 |
| HGNC | HGNC:954 |
| MGI | MGI:1859314 |
| EntrezGene (human) | GeneID:343472 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:104382 (SSTAR profile) |
| UniProt ID (human) | BARH2_HUMAN |
| UniProt ID (mouse) | BARH2_MOUSE |
| UniProt AC (human) | Q9NY43 (TFClass) |
| UniProt AC (mouse) | Q8VIB5 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 6 |
| Methyl-HT-SELEX | 2 |
| PCM | BARH2.H12INVITRO.0.SM.B.pcm |
| PWM | BARH2.H12INVITRO.0.SM.B.pwm |
| PFM | BARH2.H12INVITRO.0.SM.B.pfm |
| Alignment | BARH2.H12INVITRO.0.SM.B.words.tsv |
| Threshold to P-value map | BARH2.H12INVITRO.0.SM.B.thr |
| Motif in other formats | |
| JASPAR format | BARH2.H12INVITRO.0.SM.B_jaspar_format.txt |
| MEME format | BARH2.H12INVITRO.0.SM.B_meme_format.meme |
| Transfac format | BARH2.H12INVITRO.0.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2238.75 | 2028.75 | 2617.75 | 2026.75 |
| 02 | 3701.0 | 1446.0 | 2269.0 | 1496.0 |
| 03 | 1735.0 | 2970.0 | 2216.0 | 1991.0 |
| 04 | 138.0 | 7994.0 | 63.0 | 717.0 |
| 05 | 4558.0 | 660.0 | 3639.0 | 55.0 |
| 06 | 5182.0 | 121.0 | 3.0 | 3606.0 |
| 07 | 0.0 | 0.0 | 0.0 | 8912.0 |
| 08 | 0.0 | 0.0 | 0.0 | 8912.0 |
| 09 | 8890.0 | 0.0 | 21.0 | 1.0 |
| 10 | 2609.0 | 506.0 | 5048.0 | 749.0 |
| 11 | 1281.0 | 3009.0 | 2433.0 | 2189.0 |
| 12 | 2323.0 | 1885.0 | 2936.0 | 1768.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.251 | 0.228 | 0.294 | 0.227 |
| 02 | 0.415 | 0.162 | 0.255 | 0.168 |
| 03 | 0.195 | 0.333 | 0.249 | 0.223 |
| 04 | 0.015 | 0.897 | 0.007 | 0.08 |
| 05 | 0.511 | 0.074 | 0.408 | 0.006 |
| 06 | 0.581 | 0.014 | 0.0 | 0.405 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 0.998 | 0.0 | 0.002 | 0.0 |
| 10 | 0.293 | 0.057 | 0.566 | 0.084 |
| 11 | 0.144 | 0.338 | 0.273 | 0.246 |
| 12 | 0.261 | 0.212 | 0.329 | 0.198 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.005 | -0.094 | 0.161 | -0.095 |
| 02 | 0.507 | -0.432 | 0.018 | -0.398 |
| 03 | -0.25 | 0.287 | -0.005 | -0.112 |
| 04 | -2.766 | 1.277 | -3.531 | -1.132 |
| 05 | 0.715 | -1.214 | 0.49 | -3.662 |
| 06 | 0.844 | -2.895 | -6.047 | 0.481 |
| 07 | -6.888 | -6.888 | -6.888 | 1.386 |
| 08 | -6.888 | -6.888 | -6.888 | 1.386 |
| 09 | 1.383 | -6.888 | -4.563 | -6.524 |
| 10 | 0.158 | -1.479 | 0.817 | -1.088 |
| 11 | -0.553 | 0.3 | 0.088 | -0.018 |
| 12 | 0.042 | -0.167 | 0.276 | -0.231 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.14931 |
| 0.0005 | 6.162125 |
| 0.0001 | 7.606025 |