MotifBARH2.H12CORE.2.S.C
Gene (human)BARHL2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barhl2
Gene synonyms (mouse)Barh1, Mbh1
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
C
Motif length14
ConsensusnvRhCGTTTARYvn
GC content44.3%
Information content (bits; total / per base)12.927 / 0.923
Data sourcesHT-SELEX
Aligned words8430

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.958 0.933 0.937 0.902 0.905 0.866
best 0.996 0.994 0.99 0.985 0.975 0.966
Methyl HT-SELEX, 2 experiments median 0.967 0.945 0.955 0.928 0.933 0.902
best 0.983 0.971 0.975 0.959 0.958 0.938
Non-Methyl HT-SELEX, 6 experiments median 0.958 0.933 0.931 0.899 0.862 0.835
best 0.996 0.994 0.99 0.985 0.975 0.966
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARHL {3.1.2.1} (TFClass)
TFClass IDTFClass: 3.1.2.1.2
HGNCHGNC:954
MGIMGI:1859314
EntrezGene (human)GeneID:343472
(SSTAR profile)
EntrezGene (mouse)GeneID:104382
(SSTAR profile)
UniProt ID (human)BARH2_HUMAN
UniProt ID (mouse)BARH2_MOUSE
UniProt AC (human)Q9NY43
(TFClass)
UniProt AC (mouse)Q8VIB5
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 6
Methyl-HT-SELEX 2
PCM
ACGT
011806.51784.52007.52831.5
023067.251862.252367.251133.25
036415.0429.01194.0392.0
041613.04009.01397.01411.0
0513.08335.02.080.0
062248.016.06164.02.0
072234.012.00.06184.0
080.00.00.08430.0
090.00.00.08430.0
108430.00.00.00.0
111256.0138.06405.0631.0
12269.04563.01394.02204.0
131489.751551.754294.751093.75
141981.52234.52120.52093.5
PFM
ACGT
010.2140.2120.2380.336
020.3640.2210.2810.134
030.7610.0510.1420.047
040.1910.4760.1660.167
050.0020.9890.00.009
060.2670.0020.7310.0
070.2650.0010.00.734
080.00.00.01.0
090.00.00.01.0
101.00.00.00.0
110.1490.0160.760.075
120.0320.5410.1650.261
130.1770.1840.5090.13
140.2350.2650.2520.248
PWM
ACGT
01-0.154-0.166-0.0490.295
020.375-0.1240.116-0.619
031.112-1.588-0.567-1.677
04-0.2670.643-0.411-0.401
05-4.9291.374-6.205-3.244
060.064-4.751.073-6.205
070.058-4.997-6.8391.076
08-6.839-6.839-6.8391.385
09-6.839-6.839-6.8391.385
101.385-6.839-6.839-6.839
11-0.517-2.7111.111-1.203
12-2.0510.772-0.4130.045
13-0.346-0.3060.711-0.655
14-0.0620.0580.006-0.007
Standard thresholds
P-value Threshold
0.001 2.56706
0.0005 4.48611
0.0001 7.40641