Motif | BARH2.H12CORE.2.S.C |
Gene (human) | BARHL2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barhl2 |
Gene synonyms (mouse) | Barh1, Mbh1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 2 |
Quality | C |
Motif | BARH2.H12CORE.2.S.C |
Gene (human) | BARHL2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barhl2 |
Gene synonyms (mouse) | Barh1, Mbh1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 2 |
Quality | C |
Motif length | 14 |
Consensus | nvRhCGTTTARYvn |
GC content | 44.3% |
Information content (bits; total / per base) | 12.927 / 0.923 |
Data sources | HT-SELEX |
Aligned words | 8430 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 8 experiments | median | 0.958 | 0.933 | 0.937 | 0.902 | 0.905 | 0.866 |
best | 0.996 | 0.994 | 0.99 | 0.985 | 0.975 | 0.966 | |
Methyl HT-SELEX, 2 experiments | median | 0.967 | 0.945 | 0.955 | 0.928 | 0.933 | 0.902 |
best | 0.983 | 0.971 | 0.975 | 0.959 | 0.958 | 0.938 | |
Non-Methyl HT-SELEX, 6 experiments | median | 0.958 | 0.933 | 0.931 | 0.899 | 0.862 | 0.835 |
best | 0.996 | 0.994 | 0.99 | 0.985 | 0.975 | 0.966 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | BARHL {3.1.2.1} (TFClass) |
TFClass ID | TFClass: 3.1.2.1.2 |
HGNC | HGNC:954 |
MGI | MGI:1859314 |
EntrezGene (human) | GeneID:343472 (SSTAR profile) |
EntrezGene (mouse) | GeneID:104382 (SSTAR profile) |
UniProt ID (human) | BARH2_HUMAN |
UniProt ID (mouse) | BARH2_MOUSE |
UniProt AC (human) | Q9NY43 (TFClass) |
UniProt AC (mouse) | Q8VIB5 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 6 |
Methyl-HT-SELEX | 2 |
PCM | BARH2.H12CORE.2.S.C.pcm |
PWM | BARH2.H12CORE.2.S.C.pwm |
PFM | BARH2.H12CORE.2.S.C.pfm |
Alignment | BARH2.H12CORE.2.S.C.words.tsv |
Threshold to P-value map | BARH2.H12CORE.2.S.C.thr |
Motif in other formats | |
JASPAR format | BARH2.H12CORE.2.S.C_jaspar_format.txt |
MEME format | BARH2.H12CORE.2.S.C_meme_format.meme |
Transfac format | BARH2.H12CORE.2.S.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1806.5 | 1784.5 | 2007.5 | 2831.5 |
02 | 3067.25 | 1862.25 | 2367.25 | 1133.25 |
03 | 6415.0 | 429.0 | 1194.0 | 392.0 |
04 | 1613.0 | 4009.0 | 1397.0 | 1411.0 |
05 | 13.0 | 8335.0 | 2.0 | 80.0 |
06 | 2248.0 | 16.0 | 6164.0 | 2.0 |
07 | 2234.0 | 12.0 | 0.0 | 6184.0 |
08 | 0.0 | 0.0 | 0.0 | 8430.0 |
09 | 0.0 | 0.0 | 0.0 | 8430.0 |
10 | 8430.0 | 0.0 | 0.0 | 0.0 |
11 | 1256.0 | 138.0 | 6405.0 | 631.0 |
12 | 269.0 | 4563.0 | 1394.0 | 2204.0 |
13 | 1489.75 | 1551.75 | 4294.75 | 1093.75 |
14 | 1981.5 | 2234.5 | 2120.5 | 2093.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.214 | 0.212 | 0.238 | 0.336 |
02 | 0.364 | 0.221 | 0.281 | 0.134 |
03 | 0.761 | 0.051 | 0.142 | 0.047 |
04 | 0.191 | 0.476 | 0.166 | 0.167 |
05 | 0.002 | 0.989 | 0.0 | 0.009 |
06 | 0.267 | 0.002 | 0.731 | 0.0 |
07 | 0.265 | 0.001 | 0.0 | 0.734 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.0 | 0.0 | 0.0 | 1.0 |
10 | 1.0 | 0.0 | 0.0 | 0.0 |
11 | 0.149 | 0.016 | 0.76 | 0.075 |
12 | 0.032 | 0.541 | 0.165 | 0.261 |
13 | 0.177 | 0.184 | 0.509 | 0.13 |
14 | 0.235 | 0.265 | 0.252 | 0.248 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.154 | -0.166 | -0.049 | 0.295 |
02 | 0.375 | -0.124 | 0.116 | -0.619 |
03 | 1.112 | -1.588 | -0.567 | -1.677 |
04 | -0.267 | 0.643 | -0.411 | -0.401 |
05 | -4.929 | 1.374 | -6.205 | -3.244 |
06 | 0.064 | -4.75 | 1.073 | -6.205 |
07 | 0.058 | -4.997 | -6.839 | 1.076 |
08 | -6.839 | -6.839 | -6.839 | 1.385 |
09 | -6.839 | -6.839 | -6.839 | 1.385 |
10 | 1.385 | -6.839 | -6.839 | -6.839 |
11 | -0.517 | -2.711 | 1.111 | -1.203 |
12 | -2.051 | 0.772 | -0.413 | 0.045 |
13 | -0.346 | -0.306 | 0.711 | -0.655 |
14 | -0.062 | 0.058 | 0.006 | -0.007 |
P-value | Threshold |
---|---|
0.001 | 2.56706 |
0.0005 | 4.48611 |
0.0001 | 7.40641 |