Motif | BARH2.H12CORE.1.S.B |
Gene (human) | BARHL2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barhl2 |
Gene synonyms (mouse) | Barh1, Mbh1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | BARH2.H12CORE.1.S.B |
Gene (human) | BARHL2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barhl2 |
Gene synonyms (mouse) | Barh1, Mbh1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 20 |
Consensus | nbhnWWWddbvbCRWTTARn |
GC content | 37.33% |
Information content (bits; total / per base) | 14.061 / 0.703 |
Data sources | HT-SELEX |
Aligned words | 8049 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 8 experiments | median | 0.963 | 0.94 | 0.938 | 0.908 | 0.886 | 0.85 |
best | 0.996 | 0.994 | 0.987 | 0.983 | 0.931 | 0.924 | |
Methyl HT-SELEX, 2 experiments | median | 0.963 | 0.94 | 0.938 | 0.908 | 0.894 | 0.86 |
best | 0.963 | 0.941 | 0.942 | 0.912 | 0.899 | 0.865 | |
Non-Methyl HT-SELEX, 6 experiments | median | 0.959 | 0.935 | 0.936 | 0.903 | 0.854 | 0.835 |
best | 0.996 | 0.994 | 0.987 | 0.983 | 0.931 | 0.924 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | BARHL {3.1.2.1} (TFClass) |
TFClass ID | TFClass: 3.1.2.1.2 |
HGNC | HGNC:954 |
MGI | MGI:1859314 |
EntrezGene (human) | GeneID:343472 (SSTAR profile) |
EntrezGene (mouse) | GeneID:104382 (SSTAR profile) |
UniProt ID (human) | BARH2_HUMAN |
UniProt ID (mouse) | BARH2_MOUSE |
UniProt AC (human) | Q9NY43 (TFClass) |
UniProt AC (mouse) | Q8VIB5 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 6 |
Methyl-HT-SELEX | 2 |
PCM | BARH2.H12CORE.1.S.B.pcm |
PWM | BARH2.H12CORE.1.S.B.pwm |
PFM | BARH2.H12CORE.1.S.B.pfm |
Alignment | BARH2.H12CORE.1.S.B.words.tsv |
Threshold to P-value map | BARH2.H12CORE.1.S.B.thr |
Motif in other formats | |
JASPAR format | BARH2.H12CORE.1.S.B_jaspar_format.txt |
MEME format | BARH2.H12CORE.1.S.B_meme_format.meme |
Transfac format | BARH2.H12CORE.1.S.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1981.0 | 2305.0 | 1851.0 | 1912.0 |
02 | 1469.25 | 3312.25 | 1618.25 | 1649.25 |
03 | 1363.0 | 3989.0 | 1195.0 | 1502.0 |
04 | 2536.0 | 1579.0 | 1258.0 | 2676.0 |
05 | 3303.0 | 471.0 | 92.0 | 4183.0 |
06 | 4391.0 | 20.0 | 38.0 | 3600.0 |
07 | 4347.0 | 100.0 | 186.0 | 3416.0 |
08 | 3926.0 | 429.0 | 1022.0 | 2672.0 |
09 | 1282.0 | 1025.0 | 3126.0 | 2616.0 |
10 | 621.0 | 1733.0 | 4656.0 | 1039.0 |
11 | 3742.0 | 619.0 | 3117.0 | 571.0 |
12 | 787.0 | 3337.0 | 1704.0 | 2221.0 |
13 | 16.0 | 7642.0 | 5.0 | 386.0 |
14 | 4878.0 | 254.0 | 2896.0 | 21.0 |
15 | 4777.0 | 387.0 | 2.0 | 2883.0 |
16 | 1.0 | 0.0 | 0.0 | 8048.0 |
17 | 80.0 | 8.0 | 1.0 | 7960.0 |
18 | 7985.0 | 0.0 | 34.0 | 30.0 |
19 | 1947.0 | 410.0 | 5159.0 | 533.0 |
20 | 1441.75 | 2384.75 | 2120.75 | 2101.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.246 | 0.286 | 0.23 | 0.238 |
02 | 0.183 | 0.412 | 0.201 | 0.205 |
03 | 0.169 | 0.496 | 0.148 | 0.187 |
04 | 0.315 | 0.196 | 0.156 | 0.332 |
05 | 0.41 | 0.059 | 0.011 | 0.52 |
06 | 0.546 | 0.002 | 0.005 | 0.447 |
07 | 0.54 | 0.012 | 0.023 | 0.424 |
08 | 0.488 | 0.053 | 0.127 | 0.332 |
09 | 0.159 | 0.127 | 0.388 | 0.325 |
10 | 0.077 | 0.215 | 0.578 | 0.129 |
11 | 0.465 | 0.077 | 0.387 | 0.071 |
12 | 0.098 | 0.415 | 0.212 | 0.276 |
13 | 0.002 | 0.949 | 0.001 | 0.048 |
14 | 0.606 | 0.032 | 0.36 | 0.003 |
15 | 0.593 | 0.048 | 0.0 | 0.358 |
16 | 0.0 | 0.0 | 0.0 | 1.0 |
17 | 0.01 | 0.001 | 0.0 | 0.989 |
18 | 0.992 | 0.0 | 0.004 | 0.004 |
19 | 0.242 | 0.051 | 0.641 | 0.066 |
20 | 0.179 | 0.296 | 0.263 | 0.261 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.016 | 0.136 | -0.083 | -0.051 |
02 | -0.314 | 0.498 | -0.218 | -0.199 |
03 | -0.389 | 0.684 | -0.52 | -0.292 |
04 | 0.231 | -0.242 | -0.469 | 0.285 |
05 | 0.495 | -1.449 | -3.062 | 0.731 |
06 | 0.78 | -4.506 | -3.913 | 0.581 |
07 | 0.77 | -2.981 | -2.37 | 0.529 |
08 | 0.668 | -1.541 | -0.676 | 0.283 |
09 | -0.45 | -0.673 | 0.44 | 0.262 |
10 | -1.173 | -0.149 | 0.838 | -0.66 |
11 | 0.62 | -1.176 | 0.437 | -1.257 |
12 | -0.937 | 0.505 | -0.166 | 0.099 |
13 | -4.704 | 1.334 | -5.627 | -1.646 |
14 | 0.885 | -2.062 | 0.364 | -4.462 |
15 | 0.864 | -1.644 | -6.162 | 0.359 |
16 | -6.43 | -6.798 | -6.798 | 1.385 |
17 | -3.198 | -5.281 | -6.43 | 1.374 |
18 | 1.377 | -6.798 | -4.018 | -4.135 |
19 | -0.033 | -1.586 | 0.941 | -1.325 |
20 | -0.333 | 0.17 | 0.052 | 0.043 |
P-value | Threshold |
---|---|
0.001 | 2.58311 |
0.0005 | 4.00901 |
0.0001 | 6.86491 |