Motif | BARH1.H12RSNP.1.S.D |
Gene (human) | BARHL1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barhl1 |
Gene synonyms (mouse) | Bhx1, Mbh2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif | BARH1.H12RSNP.1.S.D |
Gene (human) | BARHL1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Barhl1 |
Gene synonyms (mouse) | Bhx1, Mbh2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif length | 18 |
Consensus | bvYTAAWYGnbnhhWWdn |
GC content | 37.03% |
Information content (bits; total / per base) | 11.906 / 0.661 |
Data sources | HT-SELEX |
Aligned words | 7323 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.932 | 0.898 | 0.894 | 0.841 | 0.852 | 0.801 |
best | 0.994 | 0.99 | 0.98 | 0.973 | 0.919 | 0.909 | |
Methyl HT-SELEX, 1 experiments | median | 0.93 | 0.885 | 0.908 | 0.859 | 0.868 | 0.82 |
best | 0.93 | 0.885 | 0.908 | 0.859 | 0.868 | 0.82 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.935 | 0.91 | 0.88 | 0.823 | 0.836 | 0.783 |
best | 0.994 | 0.99 | 0.98 | 0.973 | 0.919 | 0.909 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | BARHL {3.1.2.1} (TFClass) |
TFClass ID | TFClass: 3.1.2.1.1 |
HGNC | HGNC:953 |
MGI | MGI:1859288 |
EntrezGene (human) | GeneID:56751 (SSTAR profile) |
EntrezGene (mouse) | GeneID:54422 (SSTAR profile) |
UniProt ID (human) | BARH1_HUMAN |
UniProt ID (mouse) | BARH1_MOUSE |
UniProt AC (human) | Q9BZE3 (TFClass) |
UniProt AC (mouse) | P63157 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | BARH1.H12RSNP.1.S.D.pcm |
PWM | BARH1.H12RSNP.1.S.D.pwm |
PFM | BARH1.H12RSNP.1.S.D.pfm |
Alignment | BARH1.H12RSNP.1.S.D.words.tsv |
Threshold to P-value map | BARH1.H12RSNP.1.S.D.thr |
Motif in other formats | |
JASPAR format | BARH1.H12RSNP.1.S.D_jaspar_format.txt |
MEME format | BARH1.H12RSNP.1.S.D_meme_format.meme |
Transfac format | BARH1.H12RSNP.1.S.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1239.5 | 2953.5 | 1855.5 | 1274.5 |
02 | 1759.0 | 2051.0 | 2833.0 | 680.0 |
03 | 636.0 | 4317.0 | 511.0 | 1859.0 |
04 | 5.0 | 17.0 | 1.0 | 7300.0 |
05 | 7208.0 | 0.0 | 1.0 | 114.0 |
06 | 7323.0 | 0.0 | 0.0 | 0.0 |
07 | 3132.0 | 7.0 | 440.0 | 3744.0 |
08 | 43.0 | 3604.0 | 457.0 | 3219.0 |
09 | 837.0 | 32.0 | 6388.0 | 66.0 |
10 | 1466.0 | 2231.0 | 2502.0 | 1124.0 |
11 | 762.0 | 2754.0 | 928.0 | 2879.0 |
12 | 1317.0 | 2862.0 | 1773.0 | 1371.0 |
13 | 2255.0 | 2475.0 | 674.0 | 1919.0 |
14 | 2007.0 | 1008.0 | 378.0 | 3930.0 |
15 | 3667.0 | 430.0 | 158.0 | 3068.0 |
16 | 4539.0 | 313.0 | 163.0 | 2308.0 |
17 | 3321.5 | 627.5 | 734.5 | 2639.5 |
18 | 1959.5 | 1890.5 | 1440.5 | 2032.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.169 | 0.403 | 0.253 | 0.174 |
02 | 0.24 | 0.28 | 0.387 | 0.093 |
03 | 0.087 | 0.59 | 0.07 | 0.254 |
04 | 0.001 | 0.002 | 0.0 | 0.997 |
05 | 0.984 | 0.0 | 0.0 | 0.016 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 0.428 | 0.001 | 0.06 | 0.511 |
08 | 0.006 | 0.492 | 0.062 | 0.44 |
09 | 0.114 | 0.004 | 0.872 | 0.009 |
10 | 0.2 | 0.305 | 0.342 | 0.153 |
11 | 0.104 | 0.376 | 0.127 | 0.393 |
12 | 0.18 | 0.391 | 0.242 | 0.187 |
13 | 0.308 | 0.338 | 0.092 | 0.262 |
14 | 0.274 | 0.138 | 0.052 | 0.537 |
15 | 0.501 | 0.059 | 0.022 | 0.419 |
16 | 0.62 | 0.043 | 0.022 | 0.315 |
17 | 0.454 | 0.086 | 0.1 | 0.36 |
18 | 0.268 | 0.258 | 0.197 | 0.278 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.389 | 0.478 | 0.013 | -0.362 |
02 | -0.04 | 0.113 | 0.436 | -0.988 |
03 | -1.055 | 0.857 | -1.273 | 0.015 |
04 | -5.536 | -4.557 | -6.343 | 1.382 |
05 | 1.37 | -6.714 | -6.343 | -2.758 |
06 | 1.385 | -6.714 | -6.714 | -6.714 |
07 | 0.536 | -5.292 | -1.422 | 0.715 |
08 | -3.702 | 0.677 | -1.384 | 0.564 |
09 | -0.781 | -3.981 | 1.249 | -3.291 |
10 | -0.222 | 0.198 | 0.312 | -0.487 |
11 | -0.875 | 0.408 | -0.678 | 0.452 |
12 | -0.329 | 0.446 | -0.032 | -0.289 |
13 | 0.208 | 0.301 | -0.997 | 0.047 |
14 | 0.092 | -0.596 | -1.573 | 0.763 |
15 | 0.694 | -1.445 | -2.437 | 0.516 |
16 | 0.907 | -1.76 | -2.406 | 0.231 |
17 | 0.595 | -1.068 | -0.911 | 0.365 |
18 | 0.068 | 0.032 | -0.239 | 0.104 |
P-value | Threshold |
---|---|
0.001 | 4.02836 |
0.0005 | 5.22431 |
0.0001 | 7.41881 |