MotifBARH1.H12INVIVO.1.S.D
Gene (human)BARHL1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barhl1
Gene synonyms (mouse)Bhx1, Mbh2
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length18
ConsensusbvYTAAWYGnbnhhWWdn
GC content37.03%
Information content (bits; total / per base)11.906 / 0.661
Data sourcesHT-SELEX
Aligned words7323

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.932 0.898 0.894 0.841 0.852 0.801
best 0.994 0.99 0.98 0.973 0.919 0.909
Methyl HT-SELEX, 1 experiments median 0.93 0.885 0.908 0.859 0.868 0.82
best 0.93 0.885 0.908 0.859 0.868 0.82
Non-Methyl HT-SELEX, 3 experiments median 0.935 0.91 0.88 0.823 0.836 0.783
best 0.994 0.99 0.98 0.973 0.919 0.909
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARHL {3.1.2.1} (TFClass)
TFClass IDTFClass: 3.1.2.1.1
HGNCHGNC:953
MGIMGI:1859288
EntrezGene (human)GeneID:56751
(SSTAR profile)
EntrezGene (mouse)GeneID:54422
(SSTAR profile)
UniProt ID (human)BARH1_HUMAN
UniProt ID (mouse)BARH1_MOUSE
UniProt AC (human)Q9BZE3
(TFClass)
UniProt AC (mouse)P63157
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
011239.52953.51855.51274.5
021759.02051.02833.0680.0
03636.04317.0511.01859.0
045.017.01.07300.0
057208.00.01.0114.0
067323.00.00.00.0
073132.07.0440.03744.0
0843.03604.0457.03219.0
09837.032.06388.066.0
101466.02231.02502.01124.0
11762.02754.0928.02879.0
121317.02862.01773.01371.0
132255.02475.0674.01919.0
142007.01008.0378.03930.0
153667.0430.0158.03068.0
164539.0313.0163.02308.0
173321.5627.5734.52639.5
181959.51890.51440.52032.5
PFM
ACGT
010.1690.4030.2530.174
020.240.280.3870.093
030.0870.590.070.254
040.0010.0020.00.997
050.9840.00.00.016
061.00.00.00.0
070.4280.0010.060.511
080.0060.4920.0620.44
090.1140.0040.8720.009
100.20.3050.3420.153
110.1040.3760.1270.393
120.180.3910.2420.187
130.3080.3380.0920.262
140.2740.1380.0520.537
150.5010.0590.0220.419
160.620.0430.0220.315
170.4540.0860.10.36
180.2680.2580.1970.278
PWM
ACGT
01-0.3890.4780.013-0.362
02-0.040.1130.436-0.988
03-1.0550.857-1.2730.015
04-5.536-4.557-6.3431.382
051.37-6.714-6.343-2.758
061.385-6.714-6.714-6.714
070.536-5.292-1.4220.715
08-3.7020.677-1.3840.564
09-0.781-3.9811.249-3.291
10-0.2220.1980.312-0.487
11-0.8750.408-0.6780.452
12-0.3290.446-0.032-0.289
130.2080.301-0.9970.047
140.092-0.596-1.5730.763
150.694-1.445-2.4370.516
160.907-1.76-2.4060.231
170.595-1.068-0.9110.365
180.0680.032-0.2390.104
Standard thresholds
P-value Threshold
0.001 4.02836
0.0005 5.22431
0.0001 7.41881