MotifBARH1.H12INVIVO.0.SM.D
Gene (human)BARHL1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Barhl1
Gene synonyms (mouse)Bhx1, Mbh2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusnnvhTAAWYRnn
GC content41.54%
Information content (bits; total / per base)8.637 / 0.72
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9929

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.933 0.892 0.912 0.865 0.877 0.829
best 0.982 0.971 0.967 0.95 0.914 0.895
Methyl HT-SELEX, 1 experiments median 0.94 0.904 0.919 0.877 0.887 0.841
best 0.94 0.904 0.919 0.877 0.887 0.841
Non-Methyl HT-SELEX, 3 experiments median 0.926 0.88 0.904 0.854 0.867 0.817
best 0.982 0.971 0.967 0.95 0.914 0.895
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBARHL {3.1.2.1} (TFClass)
TFClass IDTFClass: 3.1.2.1.1
HGNCHGNC:953
MGIMGI:1859288
EntrezGene (human)GeneID:56751
(SSTAR profile)
EntrezGene (mouse)GeneID:54422
(SSTAR profile)
UniProt ID (human)BARH1_HUMAN
UniProt ID (mouse)BARH1_MOUSE
UniProt AC (human)Q9BZE3
(TFClass)
UniProt AC (mouse)P63157
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012059.02680.02924.02266.0
021760.253423.252806.251939.25
032216.02619.03914.01180.0
041015.04814.0881.03219.0
053.068.05.09853.0
069920.01.03.05.0
079929.00.00.00.0
083514.021.0789.05605.0
09171.03923.01307.04528.0
101645.0305.07609.0370.0
111729.03084.03330.01786.0
121680.752873.752118.753255.75
PFM
ACGT
010.2070.270.2940.228
020.1770.3450.2830.195
030.2230.2640.3940.119
040.1020.4850.0890.324
050.00.0070.0010.992
060.9990.00.00.001
071.00.00.00.0
080.3540.0020.0790.565
090.0170.3950.1320.456
100.1660.0310.7660.037
110.1740.3110.3350.18
120.1690.2890.2130.328
PWM
ACGT
01-0.1870.0770.164-0.091
02-0.3430.3210.123-0.247
03-0.1130.0540.455-0.743
04-0.8930.662-1.0340.26
05-6.15-3.565-5.831.378
061.385-6.624-6.15-5.83
071.386-6.985-6.985-6.985
080.347-4.669-1.1440.814
09-2.6630.457-0.6410.601
10-0.411-2.091.12-1.898
11-0.3610.2170.294-0.329
12-0.3890.146-0.1580.271
Standard thresholds
P-value Threshold
0.001 5.44531
0.0005 6.13601
0.0001 7.257885