MotifBACH2.H12RSNP.0.P.B
Gene (human)BACH2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Bach2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusSMTGAGTCAbv
GC content52.93%
Information content (bits; total / per base)12.621 / 1.147
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (33) 0.877 0.913 0.814 0.864 0.88 0.914 3.961 4.392 224.276 279.509
Mouse 4 (25) 0.896 0.927 0.841 0.889 0.894 0.928 3.961 4.735 278.432 395.699

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.988 0.976 0.94 0.934 0.818 0.834
best 0.995 0.991 0.993 0.987 0.925 0.927
Methyl HT-SELEX, 1 experiments median 0.98 0.962 0.888 0.882 0.711 0.74
best 0.98 0.962 0.888 0.882 0.711 0.74
Non-Methyl HT-SELEX, 1 experiments median 0.995 0.991 0.993 0.987 0.925 0.927
best 0.995 0.991 0.993 0.987 0.925 0.927

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.896 0.792 0.88 0.771
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyJun-related {1.1.1} (TFClass)
TF subfamilyNFE2 {1.1.1.2} (TFClass)
TFClass IDTFClass: 1.1.1.2.6
HGNCHGNC:14078
MGIMGI:894679
EntrezGene (human)GeneID:60468
(SSTAR profile)
EntrezGene (mouse)GeneID:12014
(SSTAR profile)
UniProt ID (human)BACH2_HUMAN
UniProt ID (mouse)BACH2_MOUSE
UniProt AC (human)Q9BYV9
(TFClass)
UniProt AC (mouse)P97303
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 4 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
0164.0137.0733.066.0
02106.0800.060.034.0
0376.033.07.0884.0
0436.030.0829.0105.0
05853.016.014.0117.0
0625.07.0949.019.0
0710.022.010.0958.0
0833.0952.010.05.0
09975.09.01.015.0
1040.0246.0304.0410.0
11182.0393.0260.0165.0
PFM
ACGT
010.0640.1370.7330.066
020.1060.80.060.034
030.0760.0330.0070.884
040.0360.030.8290.105
050.8530.0160.0140.117
060.0250.0070.9490.019
070.010.0220.010.958
080.0330.9520.010.005
090.9750.0090.0010.015
100.040.2460.3040.41
110.1820.3930.260.165
PWM
ACGT
01-1.343-0.5961.071-1.313
02-0.8491.158-1.406-1.952
03-1.175-1.981-3.3621.258
04-1.898-2.0711.194-0.858
051.222-2.653-2.773-0.752
06-2.243-3.3621.329-2.497
07-3.066-2.362-3.0661.338
08-1.9811.332-3.066-3.622
091.356-3.156-4.525-2.711
10-1.797-0.0160.1940.492
11-0.3150.450.039-0.412
Standard thresholds
P-value Threshold
0.001 3.92005
0.0005 4.964935
0.0001 7.082165