Motif | BACH2.H12RSNP.0.P.B |
Gene (human) | BACH2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Bach2 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | BACH2.H12RSNP.0.P.B |
Gene (human) | BACH2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Bach2 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 11 |
Consensus | SMTGAGTCAbv |
GC content | 52.93% |
Information content (bits; total / per base) | 12.621 / 1.147 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 5 (33) | 0.877 | 0.913 | 0.814 | 0.864 | 0.88 | 0.914 | 3.961 | 4.392 | 224.276 | 279.509 |
Mouse | 4 (25) | 0.896 | 0.927 | 0.841 | 0.889 | 0.894 | 0.928 | 3.961 | 4.735 | 278.432 | 395.699 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.988 | 0.976 | 0.94 | 0.934 | 0.818 | 0.834 |
best | 0.995 | 0.991 | 0.993 | 0.987 | 0.925 | 0.927 | |
Methyl HT-SELEX, 1 experiments | median | 0.98 | 0.962 | 0.888 | 0.882 | 0.711 | 0.74 |
best | 0.98 | 0.962 | 0.888 | 0.882 | 0.711 | 0.74 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.995 | 0.991 | 0.993 | 0.987 | 0.925 | 0.927 |
best | 0.995 | 0.991 | 0.993 | 0.987 | 0.925 | 0.927 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.896 | 0.792 | 0.88 | 0.771 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | Jun-related {1.1.1} (TFClass) |
TF subfamily | NFE2 {1.1.1.2} (TFClass) |
TFClass ID | TFClass: 1.1.1.2.6 |
HGNC | HGNC:14078 |
MGI | MGI:894679 |
EntrezGene (human) | GeneID:60468 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12014 (SSTAR profile) |
UniProt ID (human) | BACH2_HUMAN |
UniProt ID (mouse) | BACH2_MOUSE |
UniProt AC (human) | Q9BYV9 (TFClass) |
UniProt AC (mouse) | P97303 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 5 human, 4 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | BACH2.H12RSNP.0.P.B.pcm |
PWM | BACH2.H12RSNP.0.P.B.pwm |
PFM | BACH2.H12RSNP.0.P.B.pfm |
Alignment | BACH2.H12RSNP.0.P.B.words.tsv |
Threshold to P-value map | BACH2.H12RSNP.0.P.B.thr |
Motif in other formats | |
JASPAR format | BACH2.H12RSNP.0.P.B_jaspar_format.txt |
MEME format | BACH2.H12RSNP.0.P.B_meme_format.meme |
Transfac format | BACH2.H12RSNP.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 64.0 | 137.0 | 733.0 | 66.0 |
02 | 106.0 | 800.0 | 60.0 | 34.0 |
03 | 76.0 | 33.0 | 7.0 | 884.0 |
04 | 36.0 | 30.0 | 829.0 | 105.0 |
05 | 853.0 | 16.0 | 14.0 | 117.0 |
06 | 25.0 | 7.0 | 949.0 | 19.0 |
07 | 10.0 | 22.0 | 10.0 | 958.0 |
08 | 33.0 | 952.0 | 10.0 | 5.0 |
09 | 975.0 | 9.0 | 1.0 | 15.0 |
10 | 40.0 | 246.0 | 304.0 | 410.0 |
11 | 182.0 | 393.0 | 260.0 | 165.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.064 | 0.137 | 0.733 | 0.066 |
02 | 0.106 | 0.8 | 0.06 | 0.034 |
03 | 0.076 | 0.033 | 0.007 | 0.884 |
04 | 0.036 | 0.03 | 0.829 | 0.105 |
05 | 0.853 | 0.016 | 0.014 | 0.117 |
06 | 0.025 | 0.007 | 0.949 | 0.019 |
07 | 0.01 | 0.022 | 0.01 | 0.958 |
08 | 0.033 | 0.952 | 0.01 | 0.005 |
09 | 0.975 | 0.009 | 0.001 | 0.015 |
10 | 0.04 | 0.246 | 0.304 | 0.41 |
11 | 0.182 | 0.393 | 0.26 | 0.165 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.343 | -0.596 | 1.071 | -1.313 |
02 | -0.849 | 1.158 | -1.406 | -1.952 |
03 | -1.175 | -1.981 | -3.362 | 1.258 |
04 | -1.898 | -2.071 | 1.194 | -0.858 |
05 | 1.222 | -2.653 | -2.773 | -0.752 |
06 | -2.243 | -3.362 | 1.329 | -2.497 |
07 | -3.066 | -2.362 | -3.066 | 1.338 |
08 | -1.981 | 1.332 | -3.066 | -3.622 |
09 | 1.356 | -3.156 | -4.525 | -2.711 |
10 | -1.797 | -0.016 | 0.194 | 0.492 |
11 | -0.315 | 0.45 | 0.039 | -0.412 |
P-value | Threshold |
---|---|
0.001 | 3.92005 |
0.0005 | 4.964935 |
0.0001 | 7.082165 |