BACH1.H12RSNP.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BACH1.H12RSNP.0.P.B
Gene (human)	BACH1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Bach1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	nWKCTGWSTCMb
GC content	50.13%
Information content (bits; total / per base)	10.663 / 0.889
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (27)	0.924	0.974	0.901	0.961	0.921	0.971	5.491	6.144	352.076	496.194
Mouse	3 (16)	0.833	0.928	0.818	0.913	0.843	0.928	4.961	5.968	187.662	321.26

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.096	2.222	0.166	0.032

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	NFE2 {1.1.1.2} (TFClass)
TFClass ID	TFClass: 1.1.1.2.5
HGNC	HGNC:935
MGI	MGI:894680
EntrezGene (human)	GeneID:571 (SSTAR profile)
EntrezGene (mouse)	GeneID:12013 (SSTAR profile)
UniProt ID (human)	BACH1_HUMAN
UniProt ID (mouse)	BACH1_MOUSE
UniProt AC (human)	O14867 (TFClass)
UniProt AC (mouse)	P97302 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 3 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	BACH1.H12RSNP.0.P.B.pcm
PWM	BACH1.H12RSNP.0.P.B.pwm
PFM	BACH1.H12RSNP.0.P.B.pfm
Alignment	BACH1.H12RSNP.0.P.B.words.tsv
Threshold to P-value map	BACH1.H12RSNP.0.P.B.thr
Motif in other formats
JASPAR format	BACH1.H12RSNP.0.P.B_jaspar_format.txt
MEME format	BACH1.H12RSNP.0.P.B_meme_format.meme
Transfac format	BACH1.H12RSNP.0.P.B_transfac_format.txt
Homer format	BACH1.H12RSNP.0.P.B_homer_format_0.001.txt BACH1.H12RSNP.0.P.B_homer_format_0.0005.txt BACH1.H12RSNP.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	197.0	321.0	223.0	260.0
02	137.0	96.0	101.0	667.0
03	44.0	101.0	740.0	116.0
04	102.0	822.0	24.0	53.0
05	40.0	43.0	32.0	886.0
06	8.0	40.0	862.0	91.0
07	753.0	60.0	34.0	154.0
08	12.0	160.0	750.0	79.0
09	27.0	55.0	52.0	867.0
10	30.0	893.0	38.0	40.0
11	778.0	114.0	14.0	95.0
12	48.0	306.0	141.0	506.0

PFM

	A	C	G	T
01	0.197	0.321	0.223	0.26
02	0.137	0.096	0.101	0.666
03	0.044	0.101	0.739	0.116
04	0.102	0.821	0.024	0.053
05	0.04	0.043	0.032	0.885
06	0.008	0.04	0.861	0.091
07	0.752	0.06	0.034	0.154
08	0.012	0.16	0.749	0.079
09	0.027	0.055	0.052	0.866
10	0.03	0.892	0.038	0.04
11	0.777	0.114	0.014	0.095
12	0.048	0.306	0.141	0.505

PWM

	A	C	G	T
01	-0.237	0.247	-0.114	0.038
02	-0.597	-0.947	-0.897	0.976
03	-1.707	-0.897	1.08	-0.761
04	-0.888	1.185	-2.282	-1.527
05	-1.798	-1.729	-2.011	1.259
06	-3.254	-1.798	1.232	-1.0
07	1.097	-1.407	-1.953	-0.481
08	-2.91	-0.443	1.093	-1.138
09	-2.171	-1.491	-1.545	1.238
10	-2.072	1.267	-1.847	-1.798
11	1.13	-0.778	-2.774	-0.957
12	-1.623	0.2	-0.568	0.701

Standard thresholds

P-value	Threshold
0.001	4.54846
0.0005	5.37546
0.0001	7.14359