BACH1.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BACH1.H12INVITRO.0.P.D
Gene (human)	BACH1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Bach1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	12
Consensus	WGCTGAGTCAYn
GC content	48.84%
Information content (bits; total / per base)	16.131 / 1.344
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (27)	0.933	0.984	0.912	0.972	0.927	0.982	5.665	6.403	401.328	553.699
Mouse	3 (16)	0.84	0.936	0.832	0.929	0.843	0.935	5.082	6.119	225.561	357.481

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.921	0.987	0.143	0.019

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	NFE2 {1.1.1.2} (TFClass)
TFClass ID	TFClass: 1.1.1.2.5
HGNC	HGNC:935
MGI	MGI:894680
EntrezGene (human)	GeneID:571 (SSTAR profile)
EntrezGene (mouse)	GeneID:12013 (SSTAR profile)
UniProt ID (human)	BACH1_HUMAN
UniProt ID (mouse)	BACH1_MOUSE
UniProt AC (human)	O14867 (TFClass)
UniProt AC (mouse)	P97302 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 3 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	BACH1.H12INVITRO.0.P.D.pcm
PWM	BACH1.H12INVITRO.0.P.D.pwm
PFM	BACH1.H12INVITRO.0.P.D.pfm
Alignment	BACH1.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	BACH1.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	BACH1.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	BACH1.H12INVITRO.0.P.D_meme_format.meme
Transfac format	BACH1.H12INVITRO.0.P.D_transfac_format.txt
Homer format	BACH1.H12INVITRO.0.P.D_homer_format_0.001.txt BACH1.H12INVITRO.0.P.D_homer_format_0.0005.txt BACH1.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	96.0	55.0	46.0	803.0
02	9.0	44.0	936.0	11.0
03	40.0	940.0	0.0	20.0
04	36.0	28.0	0.0	936.0
05	22.0	18.0	899.0	61.0
06	922.0	7.0	5.0	66.0
07	21.0	162.0	792.0	25.0
08	3.0	1.0	0.0	996.0
09	24.0	972.0	2.0	2.0
10	993.0	3.0	4.0	0.0
11	22.0	278.0	90.0	610.0
12	171.0	217.0	362.0	250.0

PFM

	A	C	G	T
01	0.096	0.055	0.046	0.803
02	0.009	0.044	0.936	0.011
03	0.04	0.94	0.0	0.02
04	0.036	0.028	0.0	0.936
05	0.022	0.018	0.899	0.061
06	0.922	0.007	0.005	0.066
07	0.021	0.162	0.792	0.025
08	0.003	0.001	0.0	0.996
09	0.024	0.972	0.002	0.002
10	0.993	0.003	0.004	0.0
11	0.022	0.278	0.09	0.61
12	0.171	0.217	0.362	0.25

PWM

	A	C	G	T
01	-0.946	-1.49	-1.663	1.162
02	-3.156	-1.706	1.315	-2.985
03	-1.797	1.319	-4.982	-2.45
04	-1.898	-2.136	-4.982	1.315
05	-2.362	-2.546	1.275	-1.39
06	1.3	-3.362	-3.622	-1.313
07	-2.405	-0.43	1.148	-2.243
08	-3.975	-4.525	-4.982	1.377
09	-2.281	1.353	-4.213	-4.213
10	1.374	-3.975	-3.783	-4.982
11	-2.362	0.105	-1.01	0.888
12	-0.377	-0.141	0.368	0.0

Standard thresholds

P-value	Threshold
0.001	2.090065
0.0005	3.423995
0.0001	6.15898