ATOH8.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ATOH8.H12INVITRO.0.P.D
Gene (human)	ATOH8 (GeneCards)
Gene synonyms (human)	ATH6, BHLHA21
Gene (mouse)	Atoh8
Gene synonyms (mouse)	Ath6
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	11
Consensus	dvRRCAGMTGb
GC content	59.37%
Information content (bits; total / per base)	10.773 / 0.979
Data sources	ChIP-Seq
Aligned words	1005

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.842	0.855	0.755	0.762	0.796	0.819	2.521	2.633	97.108	99.658

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	Tal-related {1.2.3} (TFClass)
TF subfamily	Neurogenin-ATO {1.2.3.4} (TFClass)
TFClass ID	TFClass: 1.2.3.4.10
HGNC	HGNC:24126
MGI	MGI:1918343
EntrezGene (human)	GeneID:84913 (SSTAR profile)
EntrezGene (mouse)	GeneID:71093 (SSTAR profile)
UniProt ID (human)	ATOH8_HUMAN
UniProt ID (mouse)	ATOH8_MOUSE
UniProt AC (human)	Q96SQ7 (TFClass)
UniProt AC (mouse)	Q99NA2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ATOH8.H12INVITRO.0.P.D.pcm
PWM	ATOH8.H12INVITRO.0.P.D.pwm
PFM	ATOH8.H12INVITRO.0.P.D.pfm
Alignment	ATOH8.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ATOH8.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ATOH8.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ATOH8.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ATOH8.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ATOH8.H12INVITRO.0.P.D_homer_format_0.001.txt ATOH8.H12INVITRO.0.P.D_homer_format_0.0005.txt ATOH8.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	242.0	152.0	407.0	204.0
02	425.0	152.0	401.0	27.0
03	529.0	168.0	286.0	22.0
04	547.0	117.0	328.0	13.0
05	10.0	982.0	8.0	5.0
06	982.0	2.0	9.0	12.0
07	19.0	23.0	927.0	36.0
08	196.0	727.0	78.0	4.0
09	110.0	6.0	5.0	884.0
10	6.0	27.0	937.0	35.0
11	77.0	342.0	479.0	107.0

PFM

	A	C	G	T
01	0.241	0.151	0.405	0.203
02	0.423	0.151	0.399	0.027
03	0.526	0.167	0.285	0.022
04	0.544	0.116	0.326	0.013
05	0.01	0.977	0.008	0.005
06	0.977	0.002	0.009	0.012
07	0.019	0.023	0.922	0.036
08	0.195	0.723	0.078	0.004
09	0.109	0.006	0.005	0.88
10	0.006	0.027	0.932	0.035
11	0.077	0.34	0.477	0.106

PWM

	A	C	G	T
01	-0.037	-0.498	0.48	-0.207
02	0.523	-0.498	0.465	-2.175
03	0.741	-0.399	0.129	-2.367
04	0.774	-0.756	0.265	-2.844
05	-3.071	1.358	-3.258	-3.627
06	1.358	-4.217	-3.16	-2.914
07	-2.502	-2.325	1.301	-1.903
08	-0.246	1.058	-1.155	-3.788
09	-0.817	-3.488	-3.627	1.253
10	-3.488	-2.175	1.311	-1.93
11	-1.167	0.307	0.642	-0.844

Standard thresholds

P-value	Threshold
0.001	4.49617
0.0005	5.434745
0.0001	7.44322