MotifATF7.H12INVIVO.0.PSM.A
Gene (human)ATF7
(GeneCards)
Gene synonyms (human)ATFA
Gene (mouse)Atf7
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length11
ConsensusRATGACGTCAY
GC content44.71%
Information content (bits; total / per base)16.993 / 1.545
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words971

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (28) 0.851 0.992 0.834 0.986 0.841 0.999 4.959 7.853 501.631 1187.284
Mouse 1 (5) 0.783 0.833 0.722 0.787 0.773 0.82 3.158 3.473 122.18 219.921

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 3 experiments median 0.757 0.771 0.625 0.641 0.576 0.582
best 0.996 0.993 0.985 0.98 0.92 0.913
Methyl HT-SELEX, 1 experiments median 0.714 0.697 0.625 0.617 0.576 0.575
best 0.714 0.697 0.625 0.617 0.576 0.575
Non-Methyl HT-SELEX, 2 experiments median 0.876 0.882 0.802 0.811 0.74 0.748
best 0.996 0.993 0.985 0.98 0.92 0.913
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyJun-related {1.1.1} (TFClass)
TF subfamilyATF2 {1.1.1.3} (TFClass)
TFClass IDTFClass: 1.1.1.3.2
HGNCHGNC:792
MGIMGI:2443472
EntrezGene (human)GeneID:11016
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ATF7_HUMAN
UniProt ID (mouse)ATF7_MOUSE
UniProt AC (human)P17544
(TFClass)
UniProt AC (mouse)Q8R0S1
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 1
PCM
ACGT
01291.061.0576.043.0
02762.01.0206.02.0
030.01.00.0970.0
040.00.0965.06.0
05967.00.04.00.0
061.0785.09.0176.0
071.01.0966.03.0
0822.09.00.0940.0
0998.0871.02.00.0
10970.01.00.00.0
112.0263.055.0651.0
PFM
ACGT
010.30.0630.5930.044
020.7850.0010.2120.002
030.00.0010.00.999
040.00.00.9940.006
050.9960.00.0040.0
060.0010.8080.0090.181
070.0010.0010.9950.003
080.0230.0090.00.968
090.1010.8970.0020.0
100.9990.0010.00.0
110.0020.2710.0570.67
PWM
ACGT
010.18-1.360.86-1.699
021.139-4.499-0.163-4.185
03-4.957-4.499-4.9571.38
04-4.957-4.9571.375-3.455
051.377-4.957-3.755-4.957
06-4.4991.169-3.127-0.319
07-4.499-4.4991.376-3.947
08-2.333-3.127-4.9571.349
09-0.8971.273-4.185-4.957
101.38-4.499-4.957-4.957
11-4.1850.08-1.4610.982
Standard thresholds
P-value Threshold
0.001 0.38699
0.0005 1.92084
0.0001 5.350595