MotifATF6B.H12INVIVO.0.SM.D
Gene (human)ATF6B
(GeneCards)
Gene synonyms (human)CREBL1, G13
Gene (mouse)Atf6b
Gene synonyms (mouse)Crebl1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length14
ConsensusnbKRTGACGTSRYv
GC content54.99%
Information content (bits; total / per base)15.776 / 1.127
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9665

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.998 0.997 0.992 0.99 0.951 0.946
best 0.999 0.999 0.998 0.998 0.977 0.975
Methyl HT-SELEX, 1 experiments median 0.997 0.996 0.986 0.982 0.925 0.918
best 0.997 0.996 0.986 0.982 0.925 0.918
Non-Methyl HT-SELEX, 1 experiments median 0.999 0.999 0.998 0.998 0.977 0.975
best 0.999 0.999 0.998 0.998 0.977 0.975

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.954 0.854 0.936 0.601
batch 2 0.859 0.717 0.882 0.72
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyCREB-related {1.1.7} (TFClass)
TF subfamilyATF6 {1.1.7.3} (TFClass)
TFClass IDTFClass: 1.1.7.3.2
HGNCHGNC:2349
MGIMGI:105121
EntrezGene (human)GeneID:1388
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ATF6B_HUMAN
UniProt ID (mouse)ATF6B_MOUSE
UniProt AC (human)Q99941
(TFClass)
UniProt AC (mouse)O35451
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011985.52108.52936.52634.5
021346.51428.51801.55088.5
03988.0878.06717.01082.0
045402.0696.03471.096.0
057.037.027.09594.0
062.017.09620.026.0
079660.00.05.00.0
080.09663.01.01.0
090.00.09665.00.0
100.014.01.09650.0
11279.04018.05329.039.0
124116.071.04885.0593.0
13682.56677.5707.51597.5
144737.01755.01871.01302.0
PFM
ACGT
010.2050.2180.3040.273
020.1390.1480.1860.526
030.1020.0910.6950.112
040.5590.0720.3590.01
050.0010.0040.0030.993
060.00.0020.9950.003
070.9990.00.0010.0
080.01.00.00.0
090.00.01.00.0
100.00.0010.00.998
110.0290.4160.5510.004
120.4260.0070.5050.061
130.0710.6910.0730.165
140.490.1820.1940.135
PWM
ACGT
01-0.196-0.1360.1950.086
02-0.584-0.525-0.2930.744
03-0.893-1.0111.022-0.802
040.804-1.2420.362-3.203
05-5.562-4.12-4.4141.378
06-6.334-4.8311.381-4.448
071.385-6.961-5.804-6.961
08-6.9611.385-6.599-6.599
09-6.961-6.9611.386-6.961
10-6.961-5.0-6.5991.384
11-2.1520.5080.79-4.07
120.532-3.4960.703-1.402
13-1.2621.016-1.226-0.413
140.673-0.319-0.255-0.618
Standard thresholds
P-value Threshold
0.001 0.10001
0.0005 1.80801
0.0001 5.455815