MotifATF6A.H12RSNP.0.SM.D
Gene (human)ATF6
(GeneCards)
Gene synonyms (human)
Gene (mouse)Atf6
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length15
ConsensusnYGATGACGTCAYnn
GC content49.85%
Information content (bits; total / per base)19.078 / 1.272
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words2449

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.896 0.895 0.826 0.83 0.751 0.761
best 1.0 1.0 0.997 0.997 0.919 0.924
Methyl HT-SELEX, 1 experiments median 0.793 0.789 0.655 0.663 0.582 0.598
best 0.793 0.789 0.655 0.663 0.582 0.598
Non-Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.997 0.997 0.919 0.924
best 1.0 1.0 0.997 0.997 0.919 0.924
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyCREB-related {1.1.7} (TFClass)
TF subfamilyATF6 {1.1.7.3} (TFClass)
TFClass IDTFClass: 1.1.7.3.1
HGNCHGNC:791
MGIMGI:1926157
EntrezGene (human)GeneID:22926
(SSTAR profile)
EntrezGene (mouse)GeneID:226641
(SSTAR profile)
UniProt ID (human)ATF6A_HUMAN
UniProt ID (mouse)ATF6A_MOUSE
UniProt AC (human)P18850
(TFClass)
UniProt AC (mouse)F6VAN0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01706.75523.75653.75564.75
02247.0448.0260.01494.0
03181.083.02098.087.0
041884.0154.0405.06.0
050.01.02.02446.0
060.00.02449.00.0
072449.00.00.00.0
080.02449.00.00.0
090.00.02449.00.0
100.00.00.02449.0
1121.02404.021.03.0
122411.03.022.013.0
1329.01111.0127.01182.0
14497.5857.5575.5518.5
15514.5693.5523.5717.5
PFM
ACGT
010.2890.2140.2670.231
020.1010.1830.1060.61
030.0740.0340.8570.036
040.7690.0630.1650.002
050.00.00.0010.999
060.00.01.00.0
071.00.00.00.0
080.01.00.00.0
090.00.01.00.0
100.00.00.01.0
110.0090.9820.0090.001
120.9840.0010.0090.005
130.0120.4540.0520.483
140.2030.350.2350.212
150.210.2830.2140.293
PWM
ACGT
010.143-0.1560.065-0.08
02-0.903-0.311-0.8520.89
03-1.211-1.9781.229-1.932
041.122-1.371-0.412-4.347
05-5.752-5.338-5.0461.383
06-5.752-5.7521.384-5.752
071.384-5.752-5.752-5.752
08-5.7521.384-5.752-5.752
09-5.752-5.7521.384-5.752
10-5.752-5.752-5.7521.384
11-3.2871.365-3.287-4.821
121.368-4.821-3.244-3.716
13-2.9880.594-1.5610.656
14-0.2070.336-0.062-0.166
15-0.1730.124-0.1560.158
Standard thresholds
P-value Threshold
0.001 -2.50649
0.0005 -0.67834
0.0001 3.43181