Motif | ATF6A.H12RSNP.0.SM.D |
Gene (human) | ATF6 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Atf6 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | ATF6A.H12RSNP.0.SM.D |
Gene (human) | ATF6 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Atf6 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 15 |
Consensus | nYGATGACGTCAYnn |
GC content | 49.85% |
Information content (bits; total / per base) | 19.078 / 1.272 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 2449 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.896 | 0.895 | 0.826 | 0.83 | 0.751 | 0.761 |
best | 1.0 | 1.0 | 0.997 | 0.997 | 0.919 | 0.924 | |
Methyl HT-SELEX, 1 experiments | median | 0.793 | 0.789 | 0.655 | 0.663 | 0.582 | 0.598 |
best | 0.793 | 0.789 | 0.655 | 0.663 | 0.582 | 0.598 | |
Non-Methyl HT-SELEX, 1 experiments | median | 1.0 | 1.0 | 0.997 | 0.997 | 0.919 | 0.924 |
best | 1.0 | 1.0 | 0.997 | 0.997 | 0.919 | 0.924 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | CREB-related {1.1.7} (TFClass) |
TF subfamily | ATF6 {1.1.7.3} (TFClass) |
TFClass ID | TFClass: 1.1.7.3.1 |
HGNC | HGNC:791 |
MGI | MGI:1926157 |
EntrezGene (human) | GeneID:22926 (SSTAR profile) |
EntrezGene (mouse) | GeneID:226641 (SSTAR profile) |
UniProt ID (human) | ATF6A_HUMAN |
UniProt ID (mouse) | ATF6A_MOUSE |
UniProt AC (human) | P18850 (TFClass) |
UniProt AC (mouse) | F6VAN0 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | ATF6A.H12RSNP.0.SM.D.pcm |
PWM | ATF6A.H12RSNP.0.SM.D.pwm |
PFM | ATF6A.H12RSNP.0.SM.D.pfm |
Alignment | ATF6A.H12RSNP.0.SM.D.words.tsv |
Threshold to P-value map | ATF6A.H12RSNP.0.SM.D.thr |
Motif in other formats | |
JASPAR format | ATF6A.H12RSNP.0.SM.D_jaspar_format.txt |
MEME format | ATF6A.H12RSNP.0.SM.D_meme_format.meme |
Transfac format | ATF6A.H12RSNP.0.SM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 706.75 | 523.75 | 653.75 | 564.75 |
02 | 247.0 | 448.0 | 260.0 | 1494.0 |
03 | 181.0 | 83.0 | 2098.0 | 87.0 |
04 | 1884.0 | 154.0 | 405.0 | 6.0 |
05 | 0.0 | 1.0 | 2.0 | 2446.0 |
06 | 0.0 | 0.0 | 2449.0 | 0.0 |
07 | 2449.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 2449.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 2449.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 2449.0 |
11 | 21.0 | 2404.0 | 21.0 | 3.0 |
12 | 2411.0 | 3.0 | 22.0 | 13.0 |
13 | 29.0 | 1111.0 | 127.0 | 1182.0 |
14 | 497.5 | 857.5 | 575.5 | 518.5 |
15 | 514.5 | 693.5 | 523.5 | 717.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.289 | 0.214 | 0.267 | 0.231 |
02 | 0.101 | 0.183 | 0.106 | 0.61 |
03 | 0.074 | 0.034 | 0.857 | 0.036 |
04 | 0.769 | 0.063 | 0.165 | 0.002 |
05 | 0.0 | 0.0 | 0.001 | 0.999 |
06 | 0.0 | 0.0 | 1.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 1.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 1.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 1.0 |
11 | 0.009 | 0.982 | 0.009 | 0.001 |
12 | 0.984 | 0.001 | 0.009 | 0.005 |
13 | 0.012 | 0.454 | 0.052 | 0.483 |
14 | 0.203 | 0.35 | 0.235 | 0.212 |
15 | 0.21 | 0.283 | 0.214 | 0.293 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.143 | -0.156 | 0.065 | -0.08 |
02 | -0.903 | -0.311 | -0.852 | 0.89 |
03 | -1.211 | -1.978 | 1.229 | -1.932 |
04 | 1.122 | -1.371 | -0.412 | -4.347 |
05 | -5.752 | -5.338 | -5.046 | 1.383 |
06 | -5.752 | -5.752 | 1.384 | -5.752 |
07 | 1.384 | -5.752 | -5.752 | -5.752 |
08 | -5.752 | 1.384 | -5.752 | -5.752 |
09 | -5.752 | -5.752 | 1.384 | -5.752 |
10 | -5.752 | -5.752 | -5.752 | 1.384 |
11 | -3.287 | 1.365 | -3.287 | -4.821 |
12 | 1.368 | -4.821 | -3.244 | -3.716 |
13 | -2.988 | 0.594 | -1.561 | 0.656 |
14 | -0.207 | 0.336 | -0.062 | -0.166 |
15 | -0.173 | 0.124 | -0.156 | 0.158 |
P-value | Threshold |
---|---|
0.001 | -2.50649 |
0.0005 | -0.67834 |
0.0001 | 3.43181 |