Motif | ATF3.H12RSNP.1.P.B |
Gene (human) | ATF3 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Atf3 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | ATF3.H12RSNP.1.P.B |
Gene (human) | ATF3 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Atf3 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 10 |
Consensus | dRTGACKYvd |
GC content | 52.71% |
Information content (bits; total / per base) | 8.674 / 0.867 |
Data sources | ChIP-Seq |
Aligned words | 1003 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 18 (118) | 0.813 | 0.916 | 0.703 | 0.855 | 0.777 | 0.889 | 2.365 | 3.279 | 157.495 | 549.523 |
Mouse | 13 (85) | 0.844 | 0.866 | 0.695 | 0.76 | 0.766 | 0.797 | 1.997 | 2.355 | 115.125 | 159.602 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.997 | 0.995 | 0.997 | 0.994 | 0.99 | 0.986 |
best | 0.998 | 0.996 | 0.998 | 0.997 | 0.998 | 0.996 | |
Methyl HT-SELEX, 2 experiments | median | 0.995 | 0.991 | 0.991 | 0.985 | 0.98 | 0.971 |
best | 0.997 | 0.994 | 0.995 | 0.992 | 0.984 | 0.978 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.998 | 0.996 | 0.998 | 0.996 | 0.997 | 0.995 |
best | 0.998 | 0.996 | 0.998 | 0.997 | 0.998 | 0.996 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 3.059 | 5.112 | 0.091 | 0.103 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.774 | 0.466 | 0.76 | 0.497 |
batch 2 | 0.855 | 0.681 | 0.76 | 0.562 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | Fos-related {1.1.2} (TFClass) |
TF subfamily | ATF3-like {1.1.2.2} (TFClass) |
TFClass ID | TFClass: 1.1.2.2.1 |
HGNC | HGNC:785 |
MGI | MGI:109384 |
EntrezGene (human) | GeneID:467 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11910 (SSTAR profile) |
UniProt ID (human) | ATF3_HUMAN |
UniProt ID (mouse) | ATF3_MOUSE |
UniProt AC (human) | P18847 (TFClass) |
UniProt AC (mouse) | Q60765 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 18 human, 13 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | ATF3.H12RSNP.1.P.B.pcm |
PWM | ATF3.H12RSNP.1.P.B.pwm |
PFM | ATF3.H12RSNP.1.P.B.pfm |
Alignment | ATF3.H12RSNP.1.P.B.words.tsv |
Threshold to P-value map | ATF3.H12RSNP.1.P.B.thr |
Motif in other formats | |
JASPAR format | ATF3.H12RSNP.1.P.B_jaspar_format.txt |
MEME format | ATF3.H12RSNP.1.P.B_meme_format.meme |
Transfac format | ATF3.H12RSNP.1.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 235.0 | 100.0 | 509.0 | 159.0 |
02 | 299.0 | 49.0 | 647.0 | 8.0 |
03 | 12.0 | 14.0 | 13.0 | 964.0 |
04 | 4.0 | 283.0 | 706.0 | 10.0 |
05 | 890.0 | 10.0 | 86.0 | 17.0 |
06 | 13.0 | 826.0 | 9.0 | 155.0 |
07 | 36.0 | 9.0 | 732.0 | 226.0 |
08 | 44.0 | 405.0 | 8.0 | 546.0 |
09 | 453.0 | 196.0 | 321.0 | 33.0 |
10 | 510.0 | 115.0 | 249.0 | 129.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.234 | 0.1 | 0.507 | 0.159 |
02 | 0.298 | 0.049 | 0.645 | 0.008 |
03 | 0.012 | 0.014 | 0.013 | 0.961 |
04 | 0.004 | 0.282 | 0.704 | 0.01 |
05 | 0.887 | 0.01 | 0.086 | 0.017 |
06 | 0.013 | 0.824 | 0.009 | 0.155 |
07 | 0.036 | 0.009 | 0.73 | 0.225 |
08 | 0.044 | 0.404 | 0.008 | 0.544 |
09 | 0.452 | 0.195 | 0.32 | 0.033 |
10 | 0.508 | 0.115 | 0.248 | 0.129 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.064 | -0.909 | 0.705 | -0.452 |
02 | 0.175 | -1.605 | 0.944 | -3.256 |
03 | -2.912 | -2.776 | -2.842 | 1.342 |
04 | -3.786 | 0.12 | 1.031 | -3.069 |
05 | 1.262 | -3.069 | -1.057 | -2.601 |
06 | -2.842 | 1.187 | -3.158 | -0.477 |
07 | -1.901 | -3.158 | 1.067 | -0.103 |
08 | -1.709 | 0.477 | -3.256 | 0.774 |
09 | 0.588 | -0.244 | 0.245 | -1.984 |
10 | 0.706 | -0.771 | -0.007 | -0.658 |
P-value | Threshold |
---|---|
0.001 | 5.052415 |
0.0005 | 5.855285 |
0.0001 | 7.293965 |