MotifATF3.H12RSNP.1.P.B
Gene (human)ATF3
(GeneCards)
Gene synonyms (human)
Gene (mouse)Atf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length10
ConsensusdRTGACKYvd
GC content52.71%
Information content (bits; total / per base)8.674 / 0.867
Data sourcesChIP-Seq
Aligned words1003

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 18 (118) 0.813 0.916 0.703 0.855 0.777 0.889 2.365 3.279 157.495 549.523
Mouse 13 (85) 0.844 0.866 0.695 0.76 0.766 0.797 1.997 2.355 115.125 159.602

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.997 0.995 0.997 0.994 0.99 0.986
best 0.998 0.996 0.998 0.997 0.998 0.996
Methyl HT-SELEX, 2 experiments median 0.995 0.991 0.991 0.985 0.98 0.971
best 0.997 0.994 0.995 0.992 0.984 0.978
Non-Methyl HT-SELEX, 2 experiments median 0.998 0.996 0.998 0.996 0.997 0.995
best 0.998 0.996 0.998 0.997 0.998 0.996

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 3.059 5.112 0.091 0.103

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.774 0.466 0.76 0.497
batch 2 0.855 0.681 0.76 0.562
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyFos-related {1.1.2} (TFClass)
TF subfamilyATF3-like {1.1.2.2} (TFClass)
TFClass IDTFClass: 1.1.2.2.1
HGNCHGNC:785
MGIMGI:109384
EntrezGene (human)GeneID:467
(SSTAR profile)
EntrezGene (mouse)GeneID:11910
(SSTAR profile)
UniProt ID (human)ATF3_HUMAN
UniProt ID (mouse)ATF3_MOUSE
UniProt AC (human)P18847
(TFClass)
UniProt AC (mouse)Q60765
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 18 human, 13 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
01235.0100.0509.0159.0
02299.049.0647.08.0
0312.014.013.0964.0
044.0283.0706.010.0
05890.010.086.017.0
0613.0826.09.0155.0
0736.09.0732.0226.0
0844.0405.08.0546.0
09453.0196.0321.033.0
10510.0115.0249.0129.0
PFM
ACGT
010.2340.10.5070.159
020.2980.0490.6450.008
030.0120.0140.0130.961
040.0040.2820.7040.01
050.8870.010.0860.017
060.0130.8240.0090.155
070.0360.0090.730.225
080.0440.4040.0080.544
090.4520.1950.320.033
100.5080.1150.2480.129
PWM
ACGT
01-0.064-0.9090.705-0.452
020.175-1.6050.944-3.256
03-2.912-2.776-2.8421.342
04-3.7860.121.031-3.069
051.262-3.069-1.057-2.601
06-2.8421.187-3.158-0.477
07-1.901-3.1581.067-0.103
08-1.7090.477-3.2560.774
090.588-0.2440.245-1.984
100.706-0.771-0.007-0.658
Standard thresholds
P-value Threshold
0.001 5.052415
0.0005 5.855285
0.0001 7.293965