Motif | ATF3.H12INVIVO.1.P.B |
Gene (human) | ATF3 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Atf3 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | ATF3.H12INVIVO.1.P.B |
Gene (human) | ATF3 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Atf3 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 11 |
Consensus | dRTGACKYvvb |
GC content | 53.68% |
Information content (bits; total / per base) | 8.766 / 0.797 |
Data sources | ChIP-Seq |
Aligned words | 1001 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 18 (118) | 0.823 | 0.934 | 0.719 | 0.853 | 0.789 | 0.911 | 2.546 | 3.465 | 168.923 | 616.018 |
Mouse | 13 (85) | 0.851 | 0.875 | 0.713 | 0.78 | 0.77 | 0.806 | 2.06 | 2.425 | 123.678 | 173.553 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.997 | 0.994 | 0.996 | 0.993 | 0.99 | 0.985 |
best | 0.998 | 0.996 | 0.998 | 0.996 | 0.997 | 0.995 | |
Methyl HT-SELEX, 2 experiments | median | 0.995 | 0.989 | 0.991 | 0.985 | 0.98 | 0.971 |
best | 0.997 | 0.993 | 0.995 | 0.99 | 0.985 | 0.978 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.998 | 0.995 | 0.998 | 0.996 | 0.996 | 0.994 |
best | 0.998 | 0.996 | 0.998 | 0.996 | 0.997 | 0.995 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 3.331 | 5.633 | 0.074 | 0.106 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.772 | 0.446 | 0.753 | 0.5 |
batch 2 | 0.835 | 0.659 | 0.717 | 0.537 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | Fos-related {1.1.2} (TFClass) |
TF subfamily | ATF3-like {1.1.2.2} (TFClass) |
TFClass ID | TFClass: 1.1.2.2.1 |
HGNC | HGNC:785 |
MGI | MGI:109384 |
EntrezGene (human) | GeneID:467 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11910 (SSTAR profile) |
UniProt ID (human) | ATF3_HUMAN |
UniProt ID (mouse) | ATF3_MOUSE |
UniProt AC (human) | P18847 (TFClass) |
UniProt AC (mouse) | Q60765 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 18 human, 13 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | ATF3.H12INVIVO.1.P.B.pcm |
PWM | ATF3.H12INVIVO.1.P.B.pwm |
PFM | ATF3.H12INVIVO.1.P.B.pfm |
Alignment | ATF3.H12INVIVO.1.P.B.words.tsv |
Threshold to P-value map | ATF3.H12INVIVO.1.P.B.thr |
Motif in other formats | |
JASPAR format | ATF3.H12INVIVO.1.P.B_jaspar_format.txt |
MEME format | ATF3.H12INVIVO.1.P.B_meme_format.meme |
Transfac format | ATF3.H12INVIVO.1.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 215.0 | 122.0 | 530.0 | 134.0 |
02 | 301.0 | 59.0 | 630.0 | 11.0 |
03 | 20.0 | 6.0 | 13.0 | 962.0 |
04 | 12.0 | 276.0 | 706.0 | 7.0 |
05 | 893.0 | 13.0 | 90.0 | 5.0 |
06 | 5.0 | 795.0 | 11.0 | 190.0 |
07 | 20.0 | 16.0 | 734.0 | 231.0 |
08 | 30.0 | 466.0 | 7.0 | 498.0 |
09 | 474.0 | 162.0 | 333.0 | 32.0 |
10 | 478.0 | 135.0 | 258.0 | 130.0 |
11 | 138.0 | 347.0 | 202.0 | 314.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.215 | 0.122 | 0.529 | 0.134 |
02 | 0.301 | 0.059 | 0.629 | 0.011 |
03 | 0.02 | 0.006 | 0.013 | 0.961 |
04 | 0.012 | 0.276 | 0.705 | 0.007 |
05 | 0.892 | 0.013 | 0.09 | 0.005 |
06 | 0.005 | 0.794 | 0.011 | 0.19 |
07 | 0.02 | 0.016 | 0.733 | 0.231 |
08 | 0.03 | 0.466 | 0.007 | 0.498 |
09 | 0.474 | 0.162 | 0.333 | 0.032 |
10 | 0.478 | 0.135 | 0.258 | 0.13 |
11 | 0.138 | 0.347 | 0.202 | 0.314 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.151 | -0.711 | 0.747 | -0.619 |
02 | 0.183 | -1.423 | 0.919 | -2.986 |
03 | -2.451 | -3.485 | -2.84 | 1.341 |
04 | -2.91 | 0.097 | 1.033 | -3.363 |
05 | 1.267 | -2.84 | -1.011 | -3.623 |
06 | -3.623 | 1.151 | -2.986 | -0.273 |
07 | -2.451 | -2.654 | 1.072 | -0.079 |
08 | -2.072 | 0.619 | -3.363 | 0.685 |
09 | 0.636 | -0.431 | 0.284 | -2.011 |
10 | 0.644 | -0.611 | 0.03 | -0.649 |
11 | -0.59 | 0.325 | -0.213 | 0.226 |
P-value | Threshold |
---|---|
0.001 | 5.05035 |
0.0005 | 5.86919 |
0.0001 | 7.30668 |