MotifATF3.H12INVIVO.1.P.B
Gene (human)ATF3
(GeneCards)
Gene synonyms (human)
Gene (mouse)Atf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length11
ConsensusdRTGACKYvvb
GC content53.68%
Information content (bits; total / per base)8.766 / 0.797
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 18 (118) 0.823 0.934 0.719 0.853 0.789 0.911 2.546 3.465 168.923 616.018
Mouse 13 (85) 0.851 0.875 0.713 0.78 0.77 0.806 2.06 2.425 123.678 173.553

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.997 0.994 0.996 0.993 0.99 0.985
best 0.998 0.996 0.998 0.996 0.997 0.995
Methyl HT-SELEX, 2 experiments median 0.995 0.989 0.991 0.985 0.98 0.971
best 0.997 0.993 0.995 0.99 0.985 0.978
Non-Methyl HT-SELEX, 2 experiments median 0.998 0.995 0.998 0.996 0.996 0.994
best 0.998 0.996 0.998 0.996 0.997 0.995

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 3.331 5.633 0.074 0.106

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.772 0.446 0.753 0.5
batch 2 0.835 0.659 0.717 0.537
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyFos-related {1.1.2} (TFClass)
TF subfamilyATF3-like {1.1.2.2} (TFClass)
TFClass IDTFClass: 1.1.2.2.1
HGNCHGNC:785
MGIMGI:109384
EntrezGene (human)GeneID:467
(SSTAR profile)
EntrezGene (mouse)GeneID:11910
(SSTAR profile)
UniProt ID (human)ATF3_HUMAN
UniProt ID (mouse)ATF3_MOUSE
UniProt AC (human)P18847
(TFClass)
UniProt AC (mouse)Q60765
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 18 human, 13 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
01215.0122.0530.0134.0
02301.059.0630.011.0
0320.06.013.0962.0
0412.0276.0706.07.0
05893.013.090.05.0
065.0795.011.0190.0
0720.016.0734.0231.0
0830.0466.07.0498.0
09474.0162.0333.032.0
10478.0135.0258.0130.0
11138.0347.0202.0314.0
PFM
ACGT
010.2150.1220.5290.134
020.3010.0590.6290.011
030.020.0060.0130.961
040.0120.2760.7050.007
050.8920.0130.090.005
060.0050.7940.0110.19
070.020.0160.7330.231
080.030.4660.0070.498
090.4740.1620.3330.032
100.4780.1350.2580.13
110.1380.3470.2020.314
PWM
ACGT
01-0.151-0.7110.747-0.619
020.183-1.4230.919-2.986
03-2.451-3.485-2.841.341
04-2.910.0971.033-3.363
051.267-2.84-1.011-3.623
06-3.6231.151-2.986-0.273
07-2.451-2.6541.072-0.079
08-2.0720.619-3.3630.685
090.636-0.4310.284-2.011
100.644-0.6110.03-0.649
11-0.590.325-0.2130.226
Standard thresholds
P-value Threshold
0.001 5.05035
0.0005 5.86919
0.0001 7.30668