MotifATF3.H12CORE.2.P.B
Gene (human)ATF3
(GeneCards)
Gene synonyms (human)
Gene (mouse)Atf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
B
Motif length12
ConsensusRRTGAYGYAAYh
GC content45.8%
Information content (bits; total / per base)13.78 / 1.148
Data sourcesChIP-Seq
Aligned words772

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 18 (118) 0.736 0.965 0.677 0.926 0.733 0.959 2.555 5.192 136.157 693.854
Mouse 13 (85) 0.852 0.876 0.718 0.769 0.813 0.844 2.495 2.85 125.678 225.149

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.999 0.999 0.999 0.998 0.998 0.997
best 1.0 0.999 0.999 0.999 0.999 0.998
Methyl HT-SELEX, 2 experiments median 0.999 0.998 0.999 0.998 0.996 0.994
best 0.999 0.999 0.999 0.999 0.997 0.997
Non-Methyl HT-SELEX, 2 experiments median 0.999 0.999 0.999 0.998 0.999 0.998
best 1.0 0.999 0.999 0.999 0.999 0.998

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 4.616 8.332 0.133 0.136

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.722 0.428 0.767 0.518
batch 2 0.824 0.654 0.739 0.549
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyFos-related {1.1.2} (TFClass)
TF subfamilyATF3-like {1.1.2.2} (TFClass)
TFClass IDTFClass: 1.1.2.2.1
HGNCHGNC:785
MGIMGI:109384
EntrezGene (human)GeneID:467
(SSTAR profile)
EntrezGene (mouse)GeneID:11910
(SSTAR profile)
UniProt ID (human)ATF3_HUMAN
UniProt ID (mouse)ATF3_MOUSE
UniProt AC (human)P18847
(TFClass)
UniProt AC (mouse)Q60765
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 18 human, 13 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
01133.050.0563.026.0
02534.037.0200.01.0
030.00.00.0772.0
040.01.0771.00.0
05772.00.00.00.0
061.0400.08.0363.0
071.02.0660.0109.0
0843.0392.00.0337.0
09497.0274.00.01.0
10688.030.010.044.0
119.0322.090.0351.0
12200.0321.0112.0139.0
PFM
ACGT
010.1720.0650.7290.034
020.6920.0480.2590.001
030.00.00.01.0
040.00.0010.9990.0
051.00.00.00.0
060.0010.5180.010.47
070.0010.0030.8550.141
080.0560.5080.00.437
090.6440.3550.00.001
100.8910.0390.0130.057
110.0120.4170.1170.455
120.2590.4160.1450.18
PWM
ACGT
01-0.368-1.3271.065-1.951
021.012-1.6160.035-4.292
03-4.763-4.763-4.7631.38
04-4.763-4.2921.379-4.763
051.38-4.763-4.763-4.763
06-4.2920.724-3.0030.628
07-4.292-3.9731.223-0.565
08-1.4720.704-4.7630.554
090.9410.348-4.763-4.292
101.265-1.816-2.815-1.45
11-2.9050.508-0.7530.594
120.0350.505-0.538-0.325
Standard thresholds
P-value Threshold
0.001 2.93537
0.0005 4.272805
0.0001 6.99411