Motif | ATF1.H12RSNP.1.P.B |
Gene (human) | ATF1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Atf1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | ATF1.H12RSNP.1.P.B |
Gene (human) | ATF1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Atf1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 19 |
Consensus | SCSMbbnvhdRTGACGYMv |
GC content | 59.52% |
Information content (bits; total / per base) | 13.879 / 0.73 |
Data sources | ChIP-Seq |
Aligned words | 113 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 5 (32) | 0.882 | 0.954 | 0.83 | 0.929 | 0.816 | 0.936 | 4.17 | 6.073 | 245.358 | 420.119 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 18.056 | 3.98 | 0.183 | 0.103 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | CREB-related {1.1.7} (TFClass) |
TF subfamily | CREB-like {1.1.7.1} (TFClass) |
TFClass ID | TFClass: 1.1.7.1.2 |
HGNC | HGNC:783 |
MGI | MGI:1298366 |
EntrezGene (human) | GeneID:466 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11908 (SSTAR profile) |
UniProt ID (human) | ATF1_HUMAN |
UniProt ID (mouse) | ATF1_MOUSE |
UniProt AC (human) | P18846 (TFClass) |
UniProt AC (mouse) | P81269 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 5 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | ATF1.H12RSNP.1.P.B.pcm |
PWM | ATF1.H12RSNP.1.P.B.pwm |
PFM | ATF1.H12RSNP.1.P.B.pfm |
Alignment | ATF1.H12RSNP.1.P.B.words.tsv |
Threshold to P-value map | ATF1.H12RSNP.1.P.B.thr |
Motif in other formats | |
JASPAR format | ATF1.H12RSNP.1.P.B_jaspar_format.txt |
MEME format | ATF1.H12RSNP.1.P.B_meme_format.meme |
Transfac format | ATF1.H12RSNP.1.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2.0 | 16.0 | 82.0 | 13.0 |
02 | 3.0 | 92.0 | 10.0 | 8.0 |
03 | 3.0 | 17.0 | 84.0 | 9.0 |
04 | 15.0 | 83.0 | 7.0 | 8.0 |
05 | 19.0 | 29.0 | 45.0 | 20.0 |
06 | 12.0 | 48.0 | 30.0 | 23.0 |
07 | 30.0 | 29.0 | 27.0 | 27.0 |
08 | 15.0 | 46.0 | 38.0 | 14.0 |
09 | 22.0 | 30.0 | 5.0 | 56.0 |
10 | 22.0 | 17.0 | 48.0 | 26.0 |
11 | 70.0 | 9.0 | 25.0 | 9.0 |
12 | 3.0 | 8.0 | 5.0 | 97.0 |
13 | 5.0 | 0.0 | 93.0 | 15.0 |
14 | 102.0 | 2.0 | 7.0 | 2.0 |
15 | 2.0 | 107.0 | 1.0 | 3.0 |
16 | 4.0 | 3.0 | 105.0 | 1.0 |
17 | 5.0 | 28.0 | 0.0 | 80.0 |
18 | 38.0 | 65.0 | 7.0 | 3.0 |
19 | 73.0 | 15.0 | 15.0 | 10.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.018 | 0.142 | 0.726 | 0.115 |
02 | 0.027 | 0.814 | 0.088 | 0.071 |
03 | 0.027 | 0.15 | 0.743 | 0.08 |
04 | 0.133 | 0.735 | 0.062 | 0.071 |
05 | 0.168 | 0.257 | 0.398 | 0.177 |
06 | 0.106 | 0.425 | 0.265 | 0.204 |
07 | 0.265 | 0.257 | 0.239 | 0.239 |
08 | 0.133 | 0.407 | 0.336 | 0.124 |
09 | 0.195 | 0.265 | 0.044 | 0.496 |
10 | 0.195 | 0.15 | 0.425 | 0.23 |
11 | 0.619 | 0.08 | 0.221 | 0.08 |
12 | 0.027 | 0.071 | 0.044 | 0.858 |
13 | 0.044 | 0.0 | 0.823 | 0.133 |
14 | 0.903 | 0.018 | 0.062 | 0.018 |
15 | 0.018 | 0.947 | 0.009 | 0.027 |
16 | 0.035 | 0.027 | 0.929 | 0.009 |
17 | 0.044 | 0.248 | 0.0 | 0.708 |
18 | 0.336 | 0.575 | 0.062 | 0.027 |
19 | 0.646 | 0.133 | 0.133 | 0.088 |
A | C | G | T | |
---|---|---|---|---|
01 | -2.225 | -0.538 | 1.039 | -0.73 |
02 | -1.951 | 1.152 | -0.968 | -1.165 |
03 | -1.951 | -0.482 | 1.063 | -1.061 |
04 | -0.598 | 1.051 | -1.28 | -1.165 |
05 | -0.377 | 0.025 | 0.451 | -0.329 |
06 | -0.803 | 0.513 | 0.058 | -0.196 |
07 | 0.058 | 0.025 | -0.043 | -0.043 |
08 | -0.598 | 0.472 | 0.286 | -0.662 |
09 | -0.239 | 0.058 | -1.56 | 0.664 |
10 | -0.239 | -0.482 | 0.513 | -0.08 |
11 | 0.883 | -1.061 | -0.117 | -1.061 |
12 | -1.951 | -1.165 | -1.56 | 1.205 |
13 | -1.56 | -3.215 | 1.163 | -0.598 |
14 | 1.254 | -2.225 | -1.28 | -2.225 |
15 | -2.225 | 1.302 | -2.602 | -1.951 |
16 | -1.737 | -1.951 | 1.283 | -2.602 |
17 | -1.56 | -0.009 | -3.215 | 1.015 |
18 | 0.286 | 0.81 | -1.28 | -1.951 |
19 | 0.924 | -0.598 | -0.598 | -0.968 |
P-value | Threshold |
---|---|
0.001 | 4.04441 |
0.0005 | 4.97596 |
0.0001 | 6.94436 |