| Motif | ATF1.H12RSNP.0.P.B |
| Gene (human) | ATF1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Atf1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | ATF1.H12RSNP.0.P.B |
| Gene (human) | ATF1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Atf1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | hnRTGACGYMv |
| GC content | 48.41% |
| Information content (bits; total / per base) | 11.575 / 1.052 |
| Data sources | ChIP-Seq |
| Aligned words | 114 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (32) | 0.86 | 0.964 | 0.819 | 0.944 | 0.846 | 0.949 | 3.803 | 4.797 | 289.688 | 420.509 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 18.883 | 4.254 | 0.185 | 0.094 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
| TF family | CREB-related {1.1.7} (TFClass) |
| TF subfamily | CREB-like {1.1.7.1} (TFClass) |
| TFClass ID | TFClass: 1.1.7.1.2 |
| HGNC | HGNC:783 |
| MGI | MGI:1298366 |
| EntrezGene (human) | GeneID:466 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:11908 (SSTAR profile) |
| UniProt ID (human) | ATF1_HUMAN |
| UniProt ID (mouse) | ATF1_MOUSE |
| UniProt AC (human) | P18846 (TFClass) |
| UniProt AC (mouse) | P81269 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ATF1.H12RSNP.0.P.B.pcm |
| PWM | ATF1.H12RSNP.0.P.B.pwm |
| PFM | ATF1.H12RSNP.0.P.B.pfm |
| Alignment | ATF1.H12RSNP.0.P.B.words.tsv |
| Threshold to P-value map | ATF1.H12RSNP.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | ATF1.H12RSNP.0.P.B_jaspar_format.txt |
| MEME format | ATF1.H12RSNP.0.P.B_meme_format.meme |
| Transfac format | ATF1.H12RSNP.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 24.0 | 34.0 | 8.0 | 48.0 |
| 02 | 24.0 | 15.0 | 51.0 | 24.0 |
| 03 | 68.0 | 8.0 | 36.0 | 2.0 |
| 04 | 1.0 | 0.0 | 1.0 | 112.0 |
| 05 | 3.0 | 0.0 | 108.0 | 3.0 |
| 06 | 114.0 | 0.0 | 0.0 | 0.0 |
| 07 | 1.0 | 110.0 | 0.0 | 3.0 |
| 08 | 3.0 | 5.0 | 104.0 | 2.0 |
| 09 | 6.0 | 32.0 | 0.0 | 76.0 |
| 10 | 47.0 | 58.0 | 2.0 | 7.0 |
| 11 | 66.0 | 16.0 | 19.0 | 13.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.211 | 0.298 | 0.07 | 0.421 |
| 02 | 0.211 | 0.132 | 0.447 | 0.211 |
| 03 | 0.596 | 0.07 | 0.316 | 0.018 |
| 04 | 0.009 | 0.0 | 0.009 | 0.982 |
| 05 | 0.026 | 0.0 | 0.947 | 0.026 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.009 | 0.965 | 0.0 | 0.026 |
| 08 | 0.026 | 0.044 | 0.912 | 0.018 |
| 09 | 0.053 | 0.281 | 0.0 | 0.667 |
| 10 | 0.412 | 0.509 | 0.018 | 0.061 |
| 11 | 0.579 | 0.14 | 0.167 | 0.114 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.164 | 0.17 | -1.173 | 0.505 |
| 02 | -0.164 | -0.607 | 0.564 | -0.164 |
| 03 | 0.846 | -1.173 | 0.225 | -2.232 |
| 04 | -2.609 | -3.222 | -2.609 | 1.338 |
| 05 | -1.959 | -3.222 | 1.302 | -1.959 |
| 06 | 1.356 | -3.222 | -3.222 | -3.222 |
| 07 | -2.609 | 1.321 | -3.222 | -1.959 |
| 08 | -1.959 | -1.569 | 1.265 | -2.232 |
| 09 | -1.419 | 0.111 | -3.222 | 0.956 |
| 10 | 0.484 | 0.69 | -2.232 | -1.288 |
| 11 | 0.817 | -0.547 | -0.386 | -0.738 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.59565 |
| 0.0005 | 5.457895 |
| 0.0001 | 7.379825 |