ATF1.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ATF1.H12INVIVO.1.P.B
Gene (human)	ATF1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Atf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	19
Consensus	bvvvvvvbnvRTGACGYvv
GC content	64.49%
Information content (bits; total / per base)	12.474 / 0.657
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (32)	0.88	0.954	0.834	0.926	0.854	0.951	4.193	5.411	275.017	444.495

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.215	1.503	0.159	0.087

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	CREB-related {1.1.7} (TFClass)
TF subfamily	CREB-like {1.1.7.1} (TFClass)
TFClass ID	TFClass: 1.1.7.1.2
HGNC	HGNC:783
MGI	MGI:1298366
EntrezGene (human)	GeneID:466 (SSTAR profile)
EntrezGene (mouse)	GeneID:11908 (SSTAR profile)
UniProt ID (human)	ATF1_HUMAN
UniProt ID (mouse)	ATF1_MOUSE
UniProt AC (human)	P18846 (TFClass)
UniProt AC (mouse)	P81269 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ATF1.H12INVIVO.1.P.B.pcm
PWM	ATF1.H12INVIVO.1.P.B.pwm
PFM	ATF1.H12INVIVO.1.P.B.pfm
Alignment	ATF1.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	ATF1.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	ATF1.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	ATF1.H12INVIVO.1.P.B_meme_format.meme
Transfac format	ATF1.H12INVIVO.1.P.B_transfac_format.txt
Homer format	ATF1.H12INVIVO.1.P.B_homer_format_0.001.txt ATF1.H12INVIVO.1.P.B_homer_format_0.0005.txt ATF1.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	104.25	194.25	574.25	127.25
02	104.25	510.25	298.25	87.25
03	105.25	265.25	541.25	88.25
04	145.25	520.25	279.25	55.25
05	138.25	333.25	407.25	121.25
06	141.25	458.25	300.25	100.25
07	124.25	270.25	513.25	92.25
08	90.25	258.25	545.25	106.25
09	326.25	327.25	150.25	196.25
10	338.25	178.25	384.25	99.25
11	325.25	76.25	592.25	6.25
12	8.25	29.25	32.25	930.25
13	29.25	6.25	951.25	13.25
14	916.25	10.25	58.25	15.25
15	5.25	913.25	54.25	27.25
16	11.25	17.25	943.25	28.25
17	56.25	259.25	94.25	590.25
18	337.25	504.25	95.25	63.25
19	588.0	108.0	200.0	104.0

PFM

	A	C	G	T
01	0.104	0.194	0.574	0.127
02	0.104	0.51	0.298	0.087
03	0.105	0.265	0.541	0.088
04	0.145	0.52	0.279	0.055
05	0.138	0.333	0.407	0.121
06	0.141	0.458	0.3	0.1
07	0.124	0.27	0.513	0.092
08	0.09	0.258	0.545	0.106
09	0.326	0.327	0.15	0.196
10	0.338	0.178	0.384	0.099
11	0.325	0.076	0.592	0.006
12	0.008	0.029	0.032	0.93
13	0.029	0.006	0.951	0.013
14	0.916	0.01	0.058	0.015
15	0.005	0.913	0.054	0.027
16	0.011	0.017	0.943	0.028
17	0.056	0.259	0.094	0.59
18	0.337	0.504	0.095	0.063
19	0.588	0.108	0.2	0.104

PWM

	A	C	G	T
01	-0.865	-0.25	0.828	-0.669
02	-0.865	0.71	0.175	-1.04
03	-0.856	0.059	0.769	-1.029
04	-0.538	0.729	0.11	-1.486
05	-0.587	0.286	0.485	-0.716
06	-0.566	0.603	0.182	-0.904
07	-0.692	0.077	0.716	-0.985
08	-1.007	0.032	0.776	-0.846
09	0.265	0.268	-0.505	-0.24
10	0.301	-0.336	0.427	-0.913
11	0.262	-1.172	0.858	-3.452
12	-3.228	-2.095	-2.003	1.309
13	-2.095	-3.452	1.331	-2.822
14	1.294	-3.045	-1.434	-2.696
15	-3.586	1.291	-1.503	-2.162
16	-2.965	-2.585	1.323	-2.128
17	-1.468	0.036	-0.964	0.855
18	0.298	0.698	-0.954	-1.354
19	0.851	-0.83	-0.221	-0.867

Standard thresholds

P-value	Threshold
0.001	4.08141
0.0005	5.04656
0.0001	7.05921