ATF1.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ATF1.H12INVIVO.0.P.B
Gene (human)	ATF1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Atf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	ndRTGACGYvv
GC content	50.43%
Information content (bits; total / per base)	10.418 / 0.947
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (32)	0.888	0.946	0.84	0.919	0.868	0.941	3.9	4.766	304.549	426.319

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	5.593	2.45	0.213	0.077

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	CREB-related {1.1.7} (TFClass)
TF subfamily	CREB-like {1.1.7.1} (TFClass)
TFClass ID	TFClass: 1.1.7.1.2
HGNC	HGNC:783
MGI	MGI:1298366
EntrezGene (human)	GeneID:466 (SSTAR profile)
EntrezGene (mouse)	GeneID:11908 (SSTAR profile)
UniProt ID (human)	ATF1_HUMAN
UniProt ID (mouse)	ATF1_MOUSE
UniProt AC (human)	P18846 (TFClass)
UniProt AC (mouse)	P81269 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ATF1.H12INVIVO.0.P.B.pcm
PWM	ATF1.H12INVIVO.0.P.B.pwm
PFM	ATF1.H12INVIVO.0.P.B.pfm
Alignment	ATF1.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ATF1.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ATF1.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ATF1.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ATF1.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ATF1.H12INVIVO.0.P.B_homer_format_0.001.txt ATF1.H12INVIVO.0.P.B_homer_format_0.0005.txt ATF1.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	283.0	317.0	136.0	264.0
02	370.0	124.0	340.0	166.0
03	409.0	61.0	510.0	20.0
04	20.0	16.0	9.0	955.0
05	10.0	4.0	967.0	19.0
06	974.0	2.0	18.0	6.0
07	11.0	940.0	21.0	28.0
08	35.0	10.0	927.0	28.0
09	83.0	270.0	20.0	627.0
10	336.0	453.0	116.0	95.0
11	585.0	135.0	151.0	129.0

PFM

	A	C	G	T
01	0.283	0.317	0.136	0.264
02	0.37	0.124	0.34	0.166
03	0.409	0.061	0.51	0.02
04	0.02	0.016	0.009	0.955
05	0.01	0.004	0.967	0.019
06	0.974	0.002	0.018	0.006
07	0.011	0.94	0.021	0.028
08	0.035	0.01	0.927	0.028
09	0.083	0.27	0.02	0.627
10	0.336	0.453	0.116	0.095
11	0.585	0.135	0.151	0.129

PWM

	A	C	G	T
01	0.123	0.236	-0.603	0.054
02	0.39	-0.694	0.306	-0.406
03	0.49	-1.39	0.709	-2.45
04	-2.45	-2.653	-3.156	1.335
05	-3.066	-3.783	1.348	-2.497
06	1.355	-4.213	-2.546	-3.484
07	-2.985	1.319	-2.405	-2.136
08	-1.925	-3.066	1.305	-2.136
09	-1.089	0.076	-2.45	0.915
10	0.294	0.591	-0.76	-0.956
11	0.846	-0.61	-0.5	-0.655

Standard thresholds

P-value	Threshold
0.001	4.55577
0.0005	5.444065
0.0001	7.558365