MotifATF1.H12INVITRO.1.P.D
Gene (human)ATF1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Atf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length19
ConsensusSCSMbbnvhdRTGACGYMv
GC content59.52%
Information content (bits; total / per base)13.879 / 0.73
Data sourcesChIP-Seq
Aligned words113

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (32) 0.882 0.954 0.83 0.929 0.816 0.936 4.17 6.073 245.358 420.119

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 18.056 3.98 0.183 0.103
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyCREB-related {1.1.7} (TFClass)
TF subfamilyCREB-like {1.1.7.1} (TFClass)
TFClass IDTFClass: 1.1.7.1.2
HGNCHGNC:783
MGIMGI:1298366
EntrezGene (human)GeneID:466
(SSTAR profile)
EntrezGene (mouse)GeneID:11908
(SSTAR profile)
UniProt ID (human)ATF1_HUMAN
UniProt ID (mouse)ATF1_MOUSE
UniProt AC (human)P18846
(TFClass)
UniProt AC (mouse)P81269
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
012.016.082.013.0
023.092.010.08.0
033.017.084.09.0
0415.083.07.08.0
0519.029.045.020.0
0612.048.030.023.0
0730.029.027.027.0
0815.046.038.014.0
0922.030.05.056.0
1022.017.048.026.0
1170.09.025.09.0
123.08.05.097.0
135.00.093.015.0
14102.02.07.02.0
152.0107.01.03.0
164.03.0105.01.0
175.028.00.080.0
1838.065.07.03.0
1973.015.015.010.0
PFM
ACGT
010.0180.1420.7260.115
020.0270.8140.0880.071
030.0270.150.7430.08
040.1330.7350.0620.071
050.1680.2570.3980.177
060.1060.4250.2650.204
070.2650.2570.2390.239
080.1330.4070.3360.124
090.1950.2650.0440.496
100.1950.150.4250.23
110.6190.080.2210.08
120.0270.0710.0440.858
130.0440.00.8230.133
140.9030.0180.0620.018
150.0180.9470.0090.027
160.0350.0270.9290.009
170.0440.2480.00.708
180.3360.5750.0620.027
190.6460.1330.1330.088
PWM
ACGT
01-2.225-0.5381.039-0.73
02-1.9511.152-0.968-1.165
03-1.951-0.4821.063-1.061
04-0.5981.051-1.28-1.165
05-0.3770.0250.451-0.329
06-0.8030.5130.058-0.196
070.0580.025-0.043-0.043
08-0.5980.4720.286-0.662
09-0.2390.058-1.560.664
10-0.239-0.4820.513-0.08
110.883-1.061-0.117-1.061
12-1.951-1.165-1.561.205
13-1.56-3.2151.163-0.598
141.254-2.225-1.28-2.225
15-2.2251.302-2.602-1.951
16-1.737-1.9511.283-2.602
17-1.56-0.009-3.2151.015
180.2860.81-1.28-1.951
190.924-0.598-0.598-0.968
Standard thresholds
P-value Threshold
0.001 4.04441
0.0005 4.97596
0.0001 6.94436