| Motif | ATF1.H12CORE.0.P.B |
| Gene (human) | ATF1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Atf1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | ATF1.H12CORE.0.P.B |
| Gene (human) | ATF1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Atf1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 10 |
| Consensus | dRTGACGYvv |
| GC content | 55.06% |
| Information content (bits; total / per base) | 8.662 / 0.866 |
| Data sources | ChIP-Seq |
| Aligned words | 981 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (32) | 0.907 | 0.945 | 0.854 | 0.913 | 0.861 | 0.923 | 3.629 | 4.468 | 299.047 | 443.337 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 5.904 | 2.744 | 0.199 | 0.087 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
| TF family | CREB-related {1.1.7} (TFClass) |
| TF subfamily | CREB-like {1.1.7.1} (TFClass) |
| TFClass ID | TFClass: 1.1.7.1.2 |
| HGNC | HGNC:783 |
| MGI | MGI:1298366 |
| EntrezGene (human) | GeneID:466 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:11908 (SSTAR profile) |
| UniProt ID (human) | ATF1_HUMAN |
| UniProt ID (mouse) | ATF1_MOUSE |
| UniProt AC (human) | P18846 (TFClass) |
| UniProt AC (mouse) | P81269 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ATF1.H12CORE.0.P.B.pcm |
| PWM | ATF1.H12CORE.0.P.B.pwm |
| PFM | ATF1.H12CORE.0.P.B.pfm |
| Alignment | ATF1.H12CORE.0.P.B.words.tsv |
| Threshold to P-value map | ATF1.H12CORE.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | ATF1.H12CORE.0.P.B_jaspar_format.txt |
| MEME format | ATF1.H12CORE.0.P.B_meme_format.meme |
| Transfac format | ATF1.H12CORE.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 309.0 | 151.0 | 369.0 | 152.0 |
| 02 | 373.0 | 88.0 | 506.0 | 14.0 |
| 03 | 49.0 | 112.0 | 25.0 | 795.0 |
| 04 | 18.0 | 17.0 | 916.0 | 30.0 |
| 05 | 909.0 | 16.0 | 42.0 | 14.0 |
| 06 | 17.0 | 895.0 | 19.0 | 50.0 |
| 07 | 33.0 | 14.0 | 892.0 | 42.0 |
| 08 | 62.0 | 359.0 | 51.0 | 509.0 |
| 09 | 318.0 | 413.0 | 170.0 | 80.0 |
| 10 | 516.0 | 152.0 | 194.0 | 119.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.315 | 0.154 | 0.376 | 0.155 |
| 02 | 0.38 | 0.09 | 0.516 | 0.014 |
| 03 | 0.05 | 0.114 | 0.025 | 0.81 |
| 04 | 0.018 | 0.017 | 0.934 | 0.031 |
| 05 | 0.927 | 0.016 | 0.043 | 0.014 |
| 06 | 0.017 | 0.912 | 0.019 | 0.051 |
| 07 | 0.034 | 0.014 | 0.909 | 0.043 |
| 08 | 0.063 | 0.366 | 0.052 | 0.519 |
| 09 | 0.324 | 0.421 | 0.173 | 0.082 |
| 10 | 0.526 | 0.155 | 0.198 | 0.121 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.23 | -0.481 | 0.406 | -0.474 |
| 02 | 0.417 | -1.013 | 0.721 | -2.754 |
| 03 | -1.583 | -0.776 | -2.224 | 1.171 |
| 04 | -2.528 | -2.58 | 1.313 | -2.052 |
| 05 | 1.305 | -2.634 | -1.731 | -2.754 |
| 06 | -2.58 | 1.289 | -2.478 | -1.563 |
| 07 | -1.962 | -2.754 | 1.286 | -1.731 |
| 08 | -1.355 | 0.379 | -1.544 | 0.727 |
| 09 | 0.258 | 0.518 | -0.363 | -1.106 |
| 10 | 0.74 | -0.474 | -0.233 | -0.716 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.92602 |
| 0.0005 | 5.652185 |
| 0.0001 | 7.362425 |