MotifARX.H12INVITRO.0.S.B
Gene (human)ARX
(GeneCards)
Gene synonyms (human)
Gene (mouse)Arx
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length18
ConsensusdhTAATYWAATTARbnnn
GC content24.25%
Information content (bits; total / per base)17.717 / 0.984
Data sourcesHT-SELEX
Aligned words6919

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.999 0.997 0.995 0.993 0.977 0.968
best 0.999 0.998 0.998 0.997 0.992 0.99
Methyl HT-SELEX, 1 experiments median 0.969 0.948 0.951 0.924 0.923 0.891
best 0.969 0.948 0.951 0.924 0.923 0.891
Non-Methyl HT-SELEX, 5 experiments median 0.999 0.997 0.998 0.997 0.988 0.986
best 0.999 0.998 0.998 0.997 0.992 0.99

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.769 0.52 0.781 0.573
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyARX {3.1.3.3} (TFClass)
TFClass IDTFClass: 3.1.3.3.1
HGNCHGNC:18060
MGIMGI:1097716
EntrezGene (human)GeneID:170302
(SSTAR profile)
EntrezGene (mouse)GeneID:11878
(SSTAR profile)
UniProt ID (human)ARX_HUMAN
UniProt ID (mouse)ARX_MOUSE
UniProt AC (human)Q96QS3
(TFClass)
UniProt AC (mouse)O35085
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 1
PCM
ACGT
012974.01128.01373.01444.0
021015.751833.75986.753082.75
03274.092.061.06492.0
046435.061.0338.085.0
056484.0111.0300.024.0
06232.0422.0255.06010.0
075.03481.0188.03245.0
081133.01033.0377.04376.0
095788.05.01126.00.0
106914.00.05.00.0
110.00.00.06919.0
120.019.00.06900.0
136805.02.0105.07.0
142507.0607.03733.072.0
15624.02340.01165.02790.0
161252.01587.01702.02378.0
172574.51520.51318.51505.5
182242.751482.751443.751749.75
PFM
ACGT
010.430.1630.1980.209
020.1470.2650.1430.446
030.040.0130.0090.938
040.930.0090.0490.012
050.9370.0160.0430.003
060.0340.0610.0370.869
070.0010.5030.0270.469
080.1640.1490.0540.632
090.8370.0010.1630.0
100.9990.00.0010.0
110.00.00.01.0
120.00.0030.00.997
130.9840.00.0150.001
140.3620.0880.540.01
150.090.3380.1680.403
160.1810.2290.2460.344
170.3720.220.1910.218
180.3240.2140.2090.253
PWM
ACGT
010.541-0.427-0.231-0.18
02-0.5310.058-0.560.577
03-1.836-2.911-3.3111.322
041.313-3.311-1.627-2.989
051.32-2.728-1.746-4.191
06-2.001-1.407-1.9071.245
07-5.4810.699-2.2090.629
08-0.422-0.515-1.5190.927
091.207-5.481-0.429-6.664
101.385-6.664-5.481-6.664
11-6.664-6.664-6.6641.385
12-6.664-4.403-6.6641.383
131.369-6.019-2.782-5.237
140.371-1.0450.769-3.15
15-1.0170.302-0.3950.478
16-0.323-0.086-0.0160.318
170.397-0.129-0.271-0.139
180.259-0.154-0.180.011
Standard thresholds
P-value Threshold
0.001 -0.18749
0.0005 1.51596
0.0001 5.02026