Motif | ARNT2.H12RSNP.1.P.D |
Gene (human) | ARNT2 (GeneCards) |
Gene synonyms (human) | BHLHE1, KIAA0307 |
Gene (mouse) | Arnt2 |
Gene synonyms (mouse) | Kiaa0307 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif | ARNT2.H12RSNP.1.P.D |
Gene (human) | ARNT2 (GeneCards) |
Gene synonyms (human) | BHLHE1, KIAA0307 |
Gene (mouse) | Arnt2 |
Gene synonyms (mouse) | Kiaa0307 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif length | 11 |
Consensus | nRbRCGTGMbb |
GC content | 65.21% |
Information content (bits; total / per base) | 9.751 / 0.886 |
Data sources | ChIP-Seq |
Aligned words | 1002 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 13 (90) | 0.771 | 0.919 | 0.647 | 0.849 | 0.65 | 0.898 | 1.78 | 3.206 | 108.698 | 323.921 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 1 experiments | median | 0.961 | 0.933 | 0.935 | 0.904 | 0.828 | 0.814 |
best | 0.961 | 0.933 | 0.935 | 0.904 | 0.828 | 0.814 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | PAS {1.2.5} (TFClass) |
TF subfamily | PAS-ARNT {1.2.5.2} (TFClass) |
TFClass ID | TFClass: 1.2.5.2.2 |
HGNC | HGNC:16876 |
MGI | MGI:107188 |
EntrezGene (human) | GeneID:9915 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11864 (SSTAR profile) |
UniProt ID (human) | ARNT2_HUMAN |
UniProt ID (mouse) | ARNT2_MOUSE |
UniProt AC (human) | Q9HBZ2 (TFClass) |
UniProt AC (mouse) | Q61324 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 13 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 0 |
PCM | ARNT2.H12RSNP.1.P.D.pcm |
PWM | ARNT2.H12RSNP.1.P.D.pwm |
PFM | ARNT2.H12RSNP.1.P.D.pfm |
Alignment | ARNT2.H12RSNP.1.P.D.words.tsv |
Threshold to P-value map | ARNT2.H12RSNP.1.P.D.thr |
Motif in other formats | |
JASPAR format | ARNT2.H12RSNP.1.P.D_jaspar_format.txt |
MEME format | ARNT2.H12RSNP.1.P.D_meme_format.meme |
Transfac format | ARNT2.H12RSNP.1.P.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 207.0 | 278.0 | 333.0 | 184.0 |
02 | 176.0 | 150.0 | 638.0 | 38.0 |
03 | 132.0 | 209.0 | 397.0 | 264.0 |
04 | 602.0 | 18.0 | 253.0 | 129.0 |
05 | 16.0 | 977.0 | 1.0 | 8.0 |
06 | 9.0 | 4.0 | 977.0 | 12.0 |
07 | 0.0 | 0.0 | 2.0 | 1000.0 |
08 | 2.0 | 1.0 | 998.0 | 1.0 |
09 | 268.0 | 597.0 | 54.0 | 83.0 |
10 | 58.0 | 471.0 | 227.0 | 246.0 |
11 | 91.0 | 385.0 | 217.0 | 309.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.207 | 0.277 | 0.332 | 0.184 |
02 | 0.176 | 0.15 | 0.637 | 0.038 |
03 | 0.132 | 0.209 | 0.396 | 0.263 |
04 | 0.601 | 0.018 | 0.252 | 0.129 |
05 | 0.016 | 0.975 | 0.001 | 0.008 |
06 | 0.009 | 0.004 | 0.975 | 0.012 |
07 | 0.0 | 0.0 | 0.002 | 0.998 |
08 | 0.002 | 0.001 | 0.996 | 0.001 |
09 | 0.267 | 0.596 | 0.054 | 0.083 |
10 | 0.058 | 0.47 | 0.227 | 0.246 |
11 | 0.091 | 0.384 | 0.217 | 0.308 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.189 | 0.103 | 0.283 | -0.306 |
02 | -0.35 | -0.508 | 0.931 | -1.848 |
03 | -0.635 | -0.18 | 0.458 | 0.052 |
04 | 0.873 | -2.548 | 0.01 | -0.657 |
05 | -2.655 | 1.356 | -4.527 | -3.255 |
06 | -3.158 | -3.785 | 1.356 | -2.911 |
07 | -4.984 | -4.984 | -4.215 | 1.379 |
08 | -4.215 | -4.527 | 1.377 | -4.527 |
09 | 0.067 | 0.864 | -1.51 | -1.091 |
10 | -1.441 | 0.628 | -0.098 | -0.018 |
11 | -1.001 | 0.427 | -0.143 | 0.209 |
P-value | Threshold |
---|---|
0.001 | 5.05536 |
0.0005 | 5.992475 |
0.0001 | 7.496615 |