MotifARNT2.H12RSNP.1.P.D
Gene (human)ARNT2
(GeneCards)
Gene synonyms (human)BHLHE1, KIAA0307
Gene (mouse)Arnt2
Gene synonyms (mouse)Kiaa0307
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length11
ConsensusnRbRCGTGMbb
GC content65.21%
Information content (bits; total / per base)9.751 / 0.886
Data sourcesChIP-Seq
Aligned words1002

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 13 (90) 0.771 0.919 0.647 0.849 0.65 0.898 1.78 3.206 108.698 323.921

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.961 0.933 0.935 0.904 0.828 0.814
best 0.961 0.933 0.935 0.904 0.828 0.814
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyPAS {1.2.5} (TFClass)
TF subfamilyPAS-ARNT {1.2.5.2} (TFClass)
TFClass IDTFClass: 1.2.5.2.2
HGNCHGNC:16876
MGIMGI:107188
EntrezGene (human)GeneID:9915
(SSTAR profile)
EntrezGene (mouse)GeneID:11864
(SSTAR profile)
UniProt ID (human)ARNT2_HUMAN
UniProt ID (mouse)ARNT2_MOUSE
UniProt AC (human)Q9HBZ2
(TFClass)
UniProt AC (mouse)Q61324
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 13 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01207.0278.0333.0184.0
02176.0150.0638.038.0
03132.0209.0397.0264.0
04602.018.0253.0129.0
0516.0977.01.08.0
069.04.0977.012.0
070.00.02.01000.0
082.01.0998.01.0
09268.0597.054.083.0
1058.0471.0227.0246.0
1191.0385.0217.0309.0
PFM
ACGT
010.2070.2770.3320.184
020.1760.150.6370.038
030.1320.2090.3960.263
040.6010.0180.2520.129
050.0160.9750.0010.008
060.0090.0040.9750.012
070.00.00.0020.998
080.0020.0010.9960.001
090.2670.5960.0540.083
100.0580.470.2270.246
110.0910.3840.2170.308
PWM
ACGT
01-0.1890.1030.283-0.306
02-0.35-0.5080.931-1.848
03-0.635-0.180.4580.052
040.873-2.5480.01-0.657
05-2.6551.356-4.527-3.255
06-3.158-3.7851.356-2.911
07-4.984-4.984-4.2151.379
08-4.215-4.5271.377-4.527
090.0670.864-1.51-1.091
10-1.4410.628-0.098-0.018
11-1.0010.427-0.1430.209
Standard thresholds
P-value Threshold
0.001 5.05536
0.0005 5.992475
0.0001 7.496615