Motif | ARNT2.H12RSNP.0.P.D |
Gene (human) | ARNT2 (GeneCards) |
Gene synonyms (human) | BHLHE1, KIAA0307 |
Gene (mouse) | Arnt2 |
Gene synonyms (mouse) | Kiaa0307 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | ARNT2.H12RSNP.0.P.D |
Gene (human) | ARNT2 (GeneCards) |
Gene synonyms (human) | BHLHE1, KIAA0307 |
Gene (mouse) | Arnt2 |
Gene synonyms (mouse) | Kiaa0307 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 13 |
Consensus | dCGTGMbhdSvvd |
GC content | 55.32% |
Information content (bits; total / per base) | 8.722 / 0.671 |
Data sources | ChIP-Seq |
Aligned words | 989 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 13 (90) | 0.778 | 0.829 | 0.645 | 0.698 | 0.697 | 0.755 | 1.843 | 2.18 | 79.58 | 147.509 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 1 experiments | median | 0.955 | 0.925 | 0.915 | 0.882 | 0.802 | 0.787 |
best | 0.955 | 0.925 | 0.915 | 0.882 | 0.802 | 0.787 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | PAS {1.2.5} (TFClass) |
TF subfamily | PAS-ARNT {1.2.5.2} (TFClass) |
TFClass ID | TFClass: 1.2.5.2.2 |
HGNC | HGNC:16876 |
MGI | MGI:107188 |
EntrezGene (human) | GeneID:9915 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11864 (SSTAR profile) |
UniProt ID (human) | ARNT2_HUMAN |
UniProt ID (mouse) | ARNT2_MOUSE |
UniProt AC (human) | Q9HBZ2 (TFClass) |
UniProt AC (mouse) | Q61324 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 13 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 0 |
PCM | ARNT2.H12RSNP.0.P.D.pcm |
PWM | ARNT2.H12RSNP.0.P.D.pwm |
PFM | ARNT2.H12RSNP.0.P.D.pfm |
Alignment | ARNT2.H12RSNP.0.P.D.words.tsv |
Threshold to P-value map | ARNT2.H12RSNP.0.P.D.thr |
Motif in other formats | |
JASPAR format | ARNT2.H12RSNP.0.P.D_jaspar_format.txt |
MEME format | ARNT2.H12RSNP.0.P.D_meme_format.meme |
Transfac format | ARNT2.H12RSNP.0.P.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 439.0 | 93.0 | 217.0 | 240.0 |
02 | 14.0 | 738.0 | 19.0 | 218.0 |
03 | 33.0 | 46.0 | 898.0 | 12.0 |
04 | 1.0 | 4.0 | 7.0 | 977.0 |
05 | 1.0 | 3.0 | 979.0 | 6.0 |
06 | 426.0 | 451.0 | 43.0 | 69.0 |
07 | 94.0 | 518.0 | 117.0 | 260.0 |
08 | 129.0 | 272.0 | 98.0 | 490.0 |
09 | 200.0 | 101.0 | 348.0 | 340.0 |
10 | 59.0 | 212.0 | 606.0 | 112.0 |
11 | 329.0 | 378.0 | 219.0 | 63.0 |
12 | 461.0 | 219.0 | 160.0 | 149.0 |
13 | 142.0 | 124.0 | 243.0 | 480.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.444 | 0.094 | 0.219 | 0.243 |
02 | 0.014 | 0.746 | 0.019 | 0.22 |
03 | 0.033 | 0.047 | 0.908 | 0.012 |
04 | 0.001 | 0.004 | 0.007 | 0.988 |
05 | 0.001 | 0.003 | 0.99 | 0.006 |
06 | 0.431 | 0.456 | 0.043 | 0.07 |
07 | 0.095 | 0.524 | 0.118 | 0.263 |
08 | 0.13 | 0.275 | 0.099 | 0.495 |
09 | 0.202 | 0.102 | 0.352 | 0.344 |
10 | 0.06 | 0.214 | 0.613 | 0.113 |
11 | 0.333 | 0.382 | 0.221 | 0.064 |
12 | 0.466 | 0.221 | 0.162 | 0.151 |
13 | 0.144 | 0.125 | 0.246 | 0.485 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.571 | -0.966 | -0.13 | -0.03 |
02 | -2.762 | 1.089 | -2.486 | -0.125 |
03 | -1.97 | -1.652 | 1.285 | -2.898 |
04 | -4.515 | -3.773 | -3.351 | 1.369 |
05 | -4.515 | -3.965 | 1.371 | -3.473 |
06 | 0.541 | 0.598 | -1.717 | -1.259 |
07 | -0.956 | 0.736 | -0.741 | 0.05 |
08 | -0.644 | 0.095 | -0.915 | 0.681 |
09 | -0.21 | -0.885 | 0.34 | 0.317 |
10 | -1.411 | -0.153 | 0.892 | -0.784 |
11 | 0.284 | 0.422 | -0.12 | -1.347 |
12 | 0.62 | -0.12 | -0.431 | -0.502 |
13 | -0.549 | -0.683 | -0.017 | 0.66 |
P-value | Threshold |
---|---|
0.001 | 5.11376 |
0.0005 | 5.84691 |
0.0001 | 7.217815 |