| Motif | ARNT2.H12INVIVO.1.P.B |
| Gene (human) | ARNT2 (GeneCards) |
| Gene synonyms (human) | BHLHE1, KIAA0307 |
| Gene (mouse) | Arnt2 |
| Gene synonyms (mouse) | Kiaa0307 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | ARNT2.H12INVIVO.1.P.B |
| Gene (human) | ARNT2 (GeneCards) |
| Gene synonyms (human) | BHLHE1, KIAA0307 |
| Gene (mouse) | Arnt2 |
| Gene synonyms (mouse) | Kiaa0307 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 11 |
| Consensus | vvdWCGTGMbb |
| GC content | 61.78% |
| Information content (bits; total / per base) | 10.167 / 0.924 |
| Data sources | ChIP-Seq |
| Aligned words | 1011 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 13 (90) | 0.809 | 0.927 | 0.702 | 0.849 | 0.707 | 0.882 | 1.92 | 2.874 | 137.817 | 337.027 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.893 | 0.802 | 0.899 | 0.822 | 0.817 | 0.772 |
| best | 0.893 | 0.802 | 0.899 | 0.822 | 0.817 | 0.772 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | PAS {1.2.5} (TFClass) |
| TF subfamily | PAS-ARNT {1.2.5.2} (TFClass) |
| TFClass ID | TFClass: 1.2.5.2.2 |
| HGNC | HGNC:16876 |
| MGI | MGI:107188 |
| EntrezGene (human) | GeneID:9915 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:11864 (SSTAR profile) |
| UniProt ID (human) | ARNT2_HUMAN |
| UniProt ID (mouse) | ARNT2_MOUSE |
| UniProt AC (human) | Q9HBZ2 (TFClass) |
| UniProt AC (mouse) | Q61324 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 13 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | ARNT2.H12INVIVO.1.P.B.pcm |
| PWM | ARNT2.H12INVIVO.1.P.B.pwm |
| PFM | ARNT2.H12INVIVO.1.P.B.pfm |
| Alignment | ARNT2.H12INVIVO.1.P.B.words.tsv |
| Threshold to P-value map | ARNT2.H12INVIVO.1.P.B.thr |
| Motif in other formats | |
| JASPAR format | ARNT2.H12INVIVO.1.P.B_jaspar_format.txt |
| MEME format | ARNT2.H12INVIVO.1.P.B_meme_format.meme |
| Transfac format | ARNT2.H12INVIVO.1.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 226.0 | 246.0 | 432.0 | 107.0 |
| 02 | 254.0 | 185.0 | 486.0 | 86.0 |
| 03 | 178.0 | 96.0 | 494.0 | 243.0 |
| 04 | 482.0 | 4.0 | 101.0 | 424.0 |
| 05 | 1.0 | 998.0 | 2.0 | 10.0 |
| 06 | 2.0 | 7.0 | 1002.0 | 0.0 |
| 07 | 1.0 | 0.0 | 0.0 | 1010.0 |
| 08 | 0.0 | 0.0 | 1010.0 | 1.0 |
| 09 | 398.0 | 533.0 | 22.0 | 58.0 |
| 10 | 41.0 | 540.0 | 183.0 | 247.0 |
| 11 | 101.0 | 312.0 | 218.0 | 380.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.224 | 0.243 | 0.427 | 0.106 |
| 02 | 0.251 | 0.183 | 0.481 | 0.085 |
| 03 | 0.176 | 0.095 | 0.489 | 0.24 |
| 04 | 0.477 | 0.004 | 0.1 | 0.419 |
| 05 | 0.001 | 0.987 | 0.002 | 0.01 |
| 06 | 0.002 | 0.007 | 0.991 | 0.0 |
| 07 | 0.001 | 0.0 | 0.0 | 0.999 |
| 08 | 0.0 | 0.0 | 0.999 | 0.001 |
| 09 | 0.394 | 0.527 | 0.022 | 0.057 |
| 10 | 0.041 | 0.534 | 0.181 | 0.244 |
| 11 | 0.1 | 0.309 | 0.216 | 0.376 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.111 | -0.027 | 0.533 | -0.85 |
| 02 | 0.005 | -0.31 | 0.651 | -1.065 |
| 03 | -0.348 | -0.957 | 0.667 | -0.039 |
| 04 | 0.642 | -3.794 | -0.907 | 0.515 |
| 05 | -4.535 | 1.368 | -4.223 | -3.077 |
| 06 | -4.223 | -3.372 | 1.372 | -4.991 |
| 07 | -4.535 | -4.991 | -4.991 | 1.38 |
| 08 | -4.991 | -4.991 | 1.38 | -4.535 |
| 09 | 0.452 | 0.743 | -2.372 | -1.449 |
| 10 | -1.784 | 0.756 | -0.32 | -0.023 |
| 11 | -0.907 | 0.209 | -0.147 | 0.405 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.96373 |
| 0.0005 | 6.06675 |
| 0.0001 | 7.599915 |