ARNT2.H12INVITRO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ARNT2.H12INVITRO.1.P.B
Gene (human)	ARNT2 (GeneCards)
Gene synonyms (human)	BHLHE1, KIAA0307
Gene (mouse)	Arnt2
Gene synonyms (mouse)	Kiaa0307
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	11
Consensus	nRbRCGTGMbb
GC content	65.21%
Information content (bits; total / per base)	9.751 / 0.886
Data sources	ChIP-Seq
Aligned words	1002

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	13 (90)	0.771	0.919	0.647	0.849	0.65	0.898	1.78	3.206	108.698	323.921

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.961	0.933	0.935	0.904	0.828	0.814
Non-Methyl HT-SELEX, 1 experiments	best	0.961	0.933	0.935	0.904	0.828	0.814

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	PAS {1.2.5} (TFClass)
TF subfamily	PAS-ARNT {1.2.5.2} (TFClass)
TFClass ID	TFClass: 1.2.5.2.2
HGNC	HGNC:16876
MGI	MGI:107188
EntrezGene (human)	GeneID:9915 (SSTAR profile)
EntrezGene (mouse)	GeneID:11864 (SSTAR profile)
UniProt ID (human)	ARNT2_HUMAN
UniProt ID (mouse)	ARNT2_MOUSE
UniProt AC (human)	Q9HBZ2 (TFClass)
UniProt AC (mouse)	Q61324 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 13 mouse
HT-SELEX	1
Methyl-HT-SELEX	0

PCM	ARNT2.H12INVITRO.1.P.B.pcm
PWM	ARNT2.H12INVITRO.1.P.B.pwm
PFM	ARNT2.H12INVITRO.1.P.B.pfm
Alignment	ARNT2.H12INVITRO.1.P.B.words.tsv
Threshold to P-value map	ARNT2.H12INVITRO.1.P.B.thr
Motif in other formats
JASPAR format	ARNT2.H12INVITRO.1.P.B_jaspar_format.txt
MEME format	ARNT2.H12INVITRO.1.P.B_meme_format.meme
Transfac format	ARNT2.H12INVITRO.1.P.B_transfac_format.txt
Homer format	ARNT2.H12INVITRO.1.P.B_homer_format_0.001.txt ARNT2.H12INVITRO.1.P.B_homer_format_0.0005.txt ARNT2.H12INVITRO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	207.0	278.0	333.0	184.0
02	176.0	150.0	638.0	38.0
03	132.0	209.0	397.0	264.0
04	602.0	18.0	253.0	129.0
05	16.0	977.0	1.0	8.0
06	9.0	4.0	977.0	12.0
07	0.0	0.0	2.0	1000.0
08	2.0	1.0	998.0	1.0
09	268.0	597.0	54.0	83.0
10	58.0	471.0	227.0	246.0
11	91.0	385.0	217.0	309.0

PFM

	A	C	G	T
01	0.207	0.277	0.332	0.184
02	0.176	0.15	0.637	0.038
03	0.132	0.209	0.396	0.263
04	0.601	0.018	0.252	0.129
05	0.016	0.975	0.001	0.008
06	0.009	0.004	0.975	0.012
07	0.0	0.0	0.002	0.998
08	0.002	0.001	0.996	0.001
09	0.267	0.596	0.054	0.083
10	0.058	0.47	0.227	0.246
11	0.091	0.384	0.217	0.308

PWM

	A	C	G	T
01	-0.189	0.103	0.283	-0.306
02	-0.35	-0.508	0.931	-1.848
03	-0.635	-0.18	0.458	0.052
04	0.873	-2.548	0.01	-0.657
05	-2.655	1.356	-4.527	-3.255
06	-3.158	-3.785	1.356	-2.911
07	-4.984	-4.984	-4.215	1.379
08	-4.215	-4.527	1.377	-4.527
09	0.067	0.864	-1.51	-1.091
10	-1.441	0.628	-0.098	-0.018
11	-1.001	0.427	-0.143	0.209

Standard thresholds

P-value	Threshold
0.001	5.05536
0.0005	5.992475
0.0001	7.496615