MotifARNT2.H12INVITRO.0.P.B
Gene (human)ARNT2
(GeneCards)
Gene synonyms (human)BHLHE1, KIAA0307
Gene (mouse)Arnt2
Gene synonyms (mouse)Kiaa0307
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusdCGTGMbhdSvvd
GC content55.32%
Information content (bits; total / per base)8.722 / 0.671
Data sourcesChIP-Seq
Aligned words989

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 13 (90) 0.778 0.829 0.645 0.698 0.697 0.755 1.843 2.18 79.58 147.509

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.955 0.925 0.915 0.882 0.802 0.787
best 0.955 0.925 0.915 0.882 0.802 0.787
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyPAS {1.2.5} (TFClass)
TF subfamilyPAS-ARNT {1.2.5.2} (TFClass)
TFClass IDTFClass: 1.2.5.2.2
HGNCHGNC:16876
MGIMGI:107188
EntrezGene (human)GeneID:9915
(SSTAR profile)
EntrezGene (mouse)GeneID:11864
(SSTAR profile)
UniProt ID (human)ARNT2_HUMAN
UniProt ID (mouse)ARNT2_MOUSE
UniProt AC (human)Q9HBZ2
(TFClass)
UniProt AC (mouse)Q61324
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 13 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01439.093.0217.0240.0
0214.0738.019.0218.0
0333.046.0898.012.0
041.04.07.0977.0
051.03.0979.06.0
06426.0451.043.069.0
0794.0518.0117.0260.0
08129.0272.098.0490.0
09200.0101.0348.0340.0
1059.0212.0606.0112.0
11329.0378.0219.063.0
12461.0219.0160.0149.0
13142.0124.0243.0480.0
PFM
ACGT
010.4440.0940.2190.243
020.0140.7460.0190.22
030.0330.0470.9080.012
040.0010.0040.0070.988
050.0010.0030.990.006
060.4310.4560.0430.07
070.0950.5240.1180.263
080.130.2750.0990.495
090.2020.1020.3520.344
100.060.2140.6130.113
110.3330.3820.2210.064
120.4660.2210.1620.151
130.1440.1250.2460.485
PWM
ACGT
010.571-0.966-0.13-0.03
02-2.7621.089-2.486-0.125
03-1.97-1.6521.285-2.898
04-4.515-3.773-3.3511.369
05-4.515-3.9651.371-3.473
060.5410.598-1.717-1.259
07-0.9560.736-0.7410.05
08-0.6440.095-0.9150.681
09-0.21-0.8850.340.317
10-1.411-0.1530.892-0.784
110.2840.422-0.12-1.347
120.62-0.12-0.431-0.502
13-0.549-0.683-0.0170.66
Standard thresholds
P-value Threshold
0.001 5.11376
0.0005 5.84691
0.0001 7.217815