MotifARNT2.H12CORE.2.S.C
Gene (human)ARNT2
(GeneCards)
Gene synonyms (human)BHLHE1, KIAA0307
Gene (mouse)Arnt2
Gene synonyms (mouse)Kiaa0307
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
C
Motif length12
ConsensusndCACGTGAYnn
GC content56.55%
Information content (bits; total / per base)14.852 / 1.238
Data sourcesHT-SELEX
Aligned words8586

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 13 (90) 0.516 0.533 0.37 0.4 0.527 0.615 1.28 1.639 15.073 38.31

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.998 0.997 0.99 0.988 0.843 0.861
best 0.998 0.997 0.99 0.988 0.843 0.861
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyPAS {1.2.5} (TFClass)
TF subfamilyPAS-ARNT {1.2.5.2} (TFClass)
TFClass IDTFClass: 1.2.5.2.2
HGNCHGNC:16876
MGIMGI:107188
EntrezGene (human)GeneID:9915
(SSTAR profile)
EntrezGene (mouse)GeneID:11864
(SSTAR profile)
UniProt ID (human)ARNT2_HUMAN
UniProt ID (mouse)ARNT2_MOUSE
UniProt AC (human)Q9HBZ2
(TFClass)
UniProt AC (mouse)Q61324
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 13 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
012241.02468.02077.01800.0
021098.75867.753837.752781.75
030.08586.00.00.0
048586.00.00.00.0
050.08586.00.00.0
060.00.08586.00.0
070.00.00.08586.0
080.00.08586.00.0
098586.00.00.00.0
10221.05244.01141.01980.0
112080.752693.751357.752453.75
122163.752363.751869.752188.75
PFM
ACGT
010.2610.2870.2420.21
020.1280.1010.4470.324
030.01.00.00.0
041.00.00.00.0
050.01.00.00.0
060.00.01.00.0
070.00.00.01.0
080.00.01.00.0
091.00.00.00.0
100.0260.6110.1330.231
110.2420.3140.1580.286
120.2520.2750.2180.255
PWM
ACGT
010.0430.139-0.033-0.176
02-0.669-0.9040.5810.259
03-6.8551.386-6.855-6.855
041.386-6.855-6.855-6.855
05-6.8551.386-6.855-6.855
06-6.855-6.8551.386-6.855
07-6.855-6.855-6.8551.386
08-6.855-6.8551.386-6.855
091.386-6.855-6.855-6.855
10-2.2640.893-0.631-0.081
11-0.0310.227-0.4570.134
120.0080.096-0.1380.019
Standard thresholds
P-value Threshold
0.001 -0.146085
0.0005 1.43493
0.0001 2.98537