ARNT.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ARNT.H12INVITRO.1.P.D
Gene (human)	ARNT (GeneCards)
Gene synonyms (human)	BHLHE2
Gene (mouse)	Arnt
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	19
Consensus	vdACGTGhbnvnnnbSvbv
GC content	60.02%
Information content (bits; total / per base)	11.135 / 0.586
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	10 (58)	0.842	0.917	0.759	0.858	0.81	0.88	2.999	3.791	141.389	314.959

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	11.849	9.362	0.155	0.068

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	PAS {1.2.5} (TFClass)
TF subfamily	PAS-ARNT {1.2.5.2} (TFClass)
TFClass ID	TFClass: 1.2.5.2.1
HGNC	HGNC:700
MGI	MGI:88071
EntrezGene (human)	GeneID:405 (SSTAR profile)
EntrezGene (mouse)	GeneID:11863 (SSTAR profile)
UniProt ID (human)	ARNT_HUMAN
UniProt ID (mouse)	ARNT_MOUSE
UniProt AC (human)	P27540 (TFClass)
UniProt AC (mouse)	P53762 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	10 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ARNT.H12INVITRO.1.P.D.pcm
PWM	ARNT.H12INVITRO.1.P.D.pwm
PFM	ARNT.H12INVITRO.1.P.D.pfm
Alignment	ARNT.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ARNT.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ARNT.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ARNT.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ARNT.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ARNT.H12INVITRO.1.P.D_homer_format_0.001.txt ARNT.H12INVITRO.1.P.D_homer_format_0.0005.txt ARNT.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	190.0	247.0	507.0	57.0
02	128.0	67.0	285.0	521.0
03	786.0	28.0	182.0	5.0
04	10.0	940.0	6.0	45.0
05	40.0	2.0	959.0	0.0
06	2.0	0.0	1.0	998.0
07	0.0	0.0	1000.0	1.0
08	338.0	476.0	61.0	126.0
09	143.0	450.0	235.0	173.0
10	218.0	220.0	222.0	341.0
11	213.0	209.0	415.0	164.0
12	217.0	273.0	283.0	228.0
13	192.0	294.0	345.0	170.0
14	218.0	172.0	392.0	219.0
15	112.0	251.0	428.0	210.0
16	102.0	641.0	149.0	109.0
17	498.0	177.0	215.0	111.0
18	130.0	485.0	201.0	185.0
19	310.0	141.0	457.0	93.0

PFM

	A	C	G	T
01	0.19	0.247	0.506	0.057
02	0.128	0.067	0.285	0.52
03	0.785	0.028	0.182	0.005
04	0.01	0.939	0.006	0.045
05	0.04	0.002	0.958	0.0
06	0.002	0.0	0.001	0.997
07	0.0	0.0	0.999	0.001
08	0.338	0.476	0.061	0.126
09	0.143	0.45	0.235	0.173
10	0.218	0.22	0.222	0.341
11	0.213	0.209	0.415	0.164
12	0.217	0.273	0.283	0.228
13	0.192	0.294	0.345	0.17
14	0.218	0.172	0.392	0.219
15	0.112	0.251	0.428	0.21
16	0.102	0.64	0.149	0.109
17	0.498	0.177	0.215	0.111
18	0.13	0.485	0.201	0.185
19	0.31	0.141	0.457	0.093

PWM

	A	C	G	T
01	-0.273	-0.013	0.703	-1.456
02	-0.664	-1.299	0.129	0.73
03	1.14	-2.137	-0.316	-3.623
04	-3.067	1.318	-3.485	-1.685
05	-1.798	-4.214	1.338	-4.983
06	-4.214	-4.983	-4.526	1.378
07	-4.983	-4.983	1.38	-4.526
08	0.299	0.64	-1.391	-0.679
09	-0.554	0.584	-0.062	-0.366
10	-0.137	-0.128	-0.119	0.308
11	-0.16	-0.179	0.503	-0.419
12	-0.142	0.086	0.122	-0.092
13	-0.263	0.16	0.319	-0.383
14	-0.137	-0.372	0.446	-0.132
15	-0.796	0.003	0.534	-0.174
16	-0.888	0.936	-0.514	-0.822
17	0.685	-0.343	-0.151	-0.804
18	-0.649	0.658	-0.217	-0.3
19	0.213	-0.568	0.599	-0.978

Standard thresholds

P-value	Threshold
0.001	4.51906
0.0005	5.52901
0.0001	7.40186