| Motif | ARNT.H12INVITRO.0.P.D |
| Gene (human) | ARNT (GeneCards) |
| Gene synonyms (human) | BHLHE2 |
| Gene (mouse) | Arnt |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ARNT.H12INVITRO.0.P.D |
| Gene (human) | ARNT (GeneCards) |
| Gene synonyms (human) | BHLHE2 |
| Gene (mouse) | Arnt |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | vdACGTGMb |
| GC content | 60.49% |
| Information content (bits; total / per base) | 10.102 / 1.122 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 10 (58) | 0.842 | 0.912 | 0.764 | 0.833 | 0.796 | 0.862 | 2.612 | 3.142 | 162.241 | 343.796 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 8.97 | 7.987 | 0.169 | 0.066 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | PAS {1.2.5} (TFClass) |
| TF subfamily | PAS-ARNT {1.2.5.2} (TFClass) |
| TFClass ID | TFClass: 1.2.5.2.1 |
| HGNC | HGNC:700 |
| MGI | MGI:88071 |
| EntrezGene (human) | GeneID:405 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:11863 (SSTAR profile) |
| UniProt ID (human) | ARNT_HUMAN |
| UniProt ID (mouse) | ARNT_MOUSE |
| UniProt AC (human) | P27540 (TFClass) |
| UniProt AC (mouse) | P53762 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 10 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ARNT.H12INVITRO.0.P.D.pcm |
| PWM | ARNT.H12INVITRO.0.P.D.pwm |
| PFM | ARNT.H12INVITRO.0.P.D.pfm |
| Alignment | ARNT.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | ARNT.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | ARNT.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | ARNT.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | ARNT.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 201.0 | 263.0 | 481.0 | 55.0 |
| 02 | 129.0 | 67.0 | 271.0 | 533.0 |
| 03 | 824.0 | 14.0 | 159.0 | 3.0 |
| 04 | 3.0 | 973.0 | 2.0 | 22.0 |
| 05 | 11.0 | 4.0 | 985.0 | 0.0 |
| 06 | 1.0 | 0.0 | 1.0 | 998.0 |
| 07 | 0.0 | 0.0 | 999.0 | 1.0 |
| 08 | 322.0 | 538.0 | 55.0 | 85.0 |
| 09 | 167.0 | 430.0 | 202.0 | 201.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.201 | 0.263 | 0.481 | 0.055 |
| 02 | 0.129 | 0.067 | 0.271 | 0.533 |
| 03 | 0.824 | 0.014 | 0.159 | 0.003 |
| 04 | 0.003 | 0.973 | 0.002 | 0.022 |
| 05 | 0.011 | 0.004 | 0.985 | 0.0 |
| 06 | 0.001 | 0.0 | 0.001 | 0.998 |
| 07 | 0.0 | 0.0 | 0.999 | 0.001 |
| 08 | 0.322 | 0.538 | 0.055 | 0.085 |
| 09 | 0.167 | 0.43 | 0.202 | 0.201 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.216 | 0.05 | 0.651 | -1.49 |
| 02 | -0.655 | -1.298 | 0.08 | 0.753 |
| 03 | 1.188 | -2.773 | -0.449 | -3.975 |
| 04 | -3.975 | 1.354 | -4.213 | -2.362 |
| 05 | -2.985 | -3.783 | 1.366 | -4.982 |
| 06 | -4.525 | -4.982 | -4.525 | 1.379 |
| 07 | -4.982 | -4.982 | 1.38 | -4.525 |
| 08 | 0.252 | 0.763 | -1.49 | -1.066 |
| 09 | -0.4 | 0.539 | -0.212 | -0.216 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.86737 |
| 0.0005 | 5.992255 |
| 0.0001 | 7.586725 |