| Motif | ARI1A.H12RSNP.0.P.D |
| Gene (human) | ARID1A (GeneCards) |
| Gene synonyms (human) | BAF250, BAF250A, C1orf4, OSA1, SMARCF1 |
| Gene (mouse) | Arid1a |
| Gene synonyms (mouse) | Baf250, Baf250a, Osa1, Smarcf1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ARI1A.H12RSNP.0.P.D |
| Gene (human) | ARID1A (GeneCards) |
| Gene synonyms (human) | BAF250, BAF250A, C1orf4, OSA1, SMARCF1 |
| Gene (mouse) | Arid1a |
| Gene synonyms (mouse) | Baf250, Baf250a, Osa1, Smarcf1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | WTTTATKRShh |
| GC content | 25.84% |
| Information content (bits; total / per base) | 11.332 / 1.03 |
| Data sources | ChIP-Seq |
| Aligned words | 1001 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (5) | 0.786 | 0.809 | 0.667 | 0.705 | 0.746 | 0.771 | 2.188 | 2.313 | 70.367 | 87.523 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | ARID domain factors {3.7} (TFClass) |
| TF family | ARID-related {3.7.1} (TFClass) |
| TF subfamily | ARID1 {3.7.1.1} (TFClass) |
| TFClass ID | TFClass: 3.7.1.1.1 |
| HGNC | HGNC:11110 |
| MGI | MGI:1935147 |
| EntrezGene (human) | GeneID:8289 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:93760 (SSTAR profile) |
| UniProt ID (human) | ARI1A_HUMAN |
| UniProt ID (mouse) | ARI1A_MOUSE |
| UniProt AC (human) | O14497 (TFClass) |
| UniProt AC (mouse) | A2BH40 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ARI1A.H12RSNP.0.P.D.pcm |
| PWM | ARI1A.H12RSNP.0.P.D.pwm |
| PFM | ARI1A.H12RSNP.0.P.D.pfm |
| Alignment | ARI1A.H12RSNP.0.P.D.words.tsv |
| Threshold to P-value map | ARI1A.H12RSNP.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | ARI1A.H12RSNP.0.P.D_jaspar_format.txt |
| MEME format | ARI1A.H12RSNP.0.P.D_meme_format.meme |
| Transfac format | ARI1A.H12RSNP.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 79.0 | 39.0 | 77.0 | 806.0 |
| 02 | 2.0 | 8.0 | 4.0 | 987.0 |
| 03 | 6.0 | 23.0 | 6.0 | 966.0 |
| 04 | 45.0 | 69.0 | 18.0 | 869.0 |
| 05 | 965.0 | 17.0 | 14.0 | 5.0 |
| 06 | 18.0 | 14.0 | 6.0 | 963.0 |
| 07 | 171.0 | 1.0 | 286.0 | 543.0 |
| 08 | 252.0 | 20.0 | 666.0 | 63.0 |
| 09 | 25.0 | 339.0 | 493.0 | 144.0 |
| 10 | 266.0 | 331.0 | 109.0 | 295.0 |
| 11 | 205.0 | 182.0 | 123.0 | 491.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.079 | 0.039 | 0.077 | 0.805 |
| 02 | 0.002 | 0.008 | 0.004 | 0.986 |
| 03 | 0.006 | 0.023 | 0.006 | 0.965 |
| 04 | 0.045 | 0.069 | 0.018 | 0.868 |
| 05 | 0.964 | 0.017 | 0.014 | 0.005 |
| 06 | 0.018 | 0.014 | 0.006 | 0.962 |
| 07 | 0.171 | 0.001 | 0.286 | 0.542 |
| 08 | 0.252 | 0.02 | 0.665 | 0.063 |
| 09 | 0.025 | 0.339 | 0.493 | 0.144 |
| 10 | 0.266 | 0.331 | 0.109 | 0.295 |
| 11 | 0.205 | 0.182 | 0.123 | 0.491 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.138 | -1.822 | -1.163 | 1.165 |
| 02 | -4.214 | -3.254 | -3.784 | 1.367 |
| 03 | -3.485 | -2.321 | -3.485 | 1.346 |
| 04 | -1.685 | -1.271 | -2.547 | 1.24 |
| 05 | 1.345 | -2.599 | -2.774 | -3.623 |
| 06 | -2.547 | -2.774 | -3.485 | 1.343 |
| 07 | -0.378 | -4.526 | 0.133 | 0.771 |
| 08 | 0.007 | -2.451 | 0.975 | -1.359 |
| 09 | -2.244 | 0.302 | 0.675 | -0.548 |
| 10 | 0.061 | 0.278 | -0.822 | 0.163 |
| 11 | -0.198 | -0.316 | -0.703 | 0.671 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.325225 |
| 0.0005 | 5.31838 |
| 0.0001 | 7.31291 |