MotifARI1A.H12INVIVO.0.P.C
Gene (human)ARID1A
(GeneCards)
Gene synonyms (human)BAF250, BAF250A, C1orf4, OSA1, SMARCF1
Gene (mouse)Arid1a
Gene synonyms (mouse)Baf250, Baf250a, Osa1, Smarcf1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length11
ConsensusWTTTATKRShh
GC content25.84%
Information content (bits; total / per base)11.332 / 1.03
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.786 0.809 0.667 0.705 0.746 0.771 2.188 2.313 70.367 87.523
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classARID domain factors {3.7} (TFClass)
TF familyARID-related {3.7.1} (TFClass)
TF subfamilyARID1 {3.7.1.1} (TFClass)
TFClass IDTFClass: 3.7.1.1.1
HGNCHGNC:11110
MGIMGI:1935147
EntrezGene (human)GeneID:8289
(SSTAR profile)
EntrezGene (mouse)GeneID:93760
(SSTAR profile)
UniProt ID (human)ARI1A_HUMAN
UniProt ID (mouse)ARI1A_MOUSE
UniProt AC (human)O14497
(TFClass)
UniProt AC (mouse)A2BH40
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0179.039.077.0806.0
022.08.04.0987.0
036.023.06.0966.0
0445.069.018.0869.0
05965.017.014.05.0
0618.014.06.0963.0
07171.01.0286.0543.0
08252.020.0666.063.0
0925.0339.0493.0144.0
10266.0331.0109.0295.0
11205.0182.0123.0491.0
PFM
ACGT
010.0790.0390.0770.805
020.0020.0080.0040.986
030.0060.0230.0060.965
040.0450.0690.0180.868
050.9640.0170.0140.005
060.0180.0140.0060.962
070.1710.0010.2860.542
080.2520.020.6650.063
090.0250.3390.4930.144
100.2660.3310.1090.295
110.2050.1820.1230.491
PWM
ACGT
01-1.138-1.822-1.1631.165
02-4.214-3.254-3.7841.367
03-3.485-2.321-3.4851.346
04-1.685-1.271-2.5471.24
051.345-2.599-2.774-3.623
06-2.547-2.774-3.4851.343
07-0.378-4.5260.1330.771
080.007-2.4510.975-1.359
09-2.2440.3020.675-0.548
100.0610.278-0.8220.163
11-0.198-0.316-0.7030.671
Standard thresholds
P-value Threshold
0.001 4.325225
0.0005 5.31838
0.0001 7.31291